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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.91 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=cp+g0ZzN; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 864DE82F8 X-Spam-Score: 6.91 X-Migadu-Scanner: scn1.migadu.com X-TUID: BYR2VF0xCuoz diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..5b74118974 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,40 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-annmap + (package + (name "r-annmap") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "annmap" version)) + (sha256 + (base32 + "0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv")))) + (properties `((upstream-name . "annmap"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-biocgenerics + r-dbi + r-digest + r-genefilter + r-genomicranges + r-iranges + r-lattice + r-rmysql + r-rsamtools)) + (home-page "https://github.com/cruk-mi/annmap") + (synopsis + "Genome annotation and visualisation for Affymetrix arrays and NGS analysis") + (description + "This package @code{annmap} provides annotation mappings for Affymetrix exon +arrays and coordinate based queries to support deep sequencing data analysis. +Database access is hidden behind the API which provides a set of functions such +as @code{genesInRange()}, @code{geneToExon()}, @code{exonDetails()}, etc. +Functions to plot gene architecture and BAM file data are also provided.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21 -- 2.36.1