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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 56033@debbugs.gnu.org
Cc: rekado@elephly.net
Subject: [bug#56033] [PATCH] gnu: Add r-amountain.
Date: Fri, 17 Jun 2022 11:09:20 +0200	[thread overview]
Message-ID: <20220617090920.32056-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-amountain): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..4fc7949c75 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,30 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-amountain
+  (package
+    (name "r-amountain")
+    (version "1.22.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AMOUNTAIN" version))
+              (sha256
+               (base32
+                "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
+    (properties `((upstream-name . "AMOUNTAIN")))
+    (build-system r-build-system)
+    (inputs (list gsl))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AMOUNTAIN")
+    (synopsis "Modules for multilayer weighted gene co-expression networks")
+    (description
+     "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted
+gene co-expression network) could be constructed only from expression profile.
+Different layers in such networks may represent different time points, multiple
+conditions or various species.  @code{AMOUNTAIN} aims to search active modules
+in multi-layer WGCN using a continuous optimization approach.")
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1





             reply	other threads:[~2022-06-17  9:10 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-06-17  9:09 Mădălin Ionel Patrașcu [this message]
2022-06-30 13:30 ` bug#56033: [PATCH] gnu: Add r-amountain Ricardo Wurmus

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