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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.14 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:14 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:58 -0400 Message-Id: <20220515044629.6843-31-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652590608; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=cW1glpgXIDuKu9Gz1XE55ZyEOsqgMPRoWkPPbj+QFoc=; b=g+kt+tmBNjd76S3zF9dJpL2O/zd4RUq60gs5PE77kPvURZeCzqRu1A2HbFCyVukKPWRniB THHgkSm293WSsarLJ60EJAk3jreXSNgfEq/Nitbvd+59VgFrQX0RuxbhcO3naiKorBT24b Jl74yO4ag+5zezO2nEKUJmWiWs2M+Oa8BeOlx3ZaqFMnOEyWSwEa8+UTNx0w/QMSoEjNT/ a4u3l4mu1URbBzKWsW5HOXIGY0Qje4dGmLBoUwgL57Wn0Amu8RzBIjYxh9c34VZ3JvCiu8 LQfJxLgSICPkIwk8TS9F0QgG0CVzZV3rv068EAtozCNkEZr2PHnK1JAtkmqLeQ== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652590608; a=rsa-sha256; cv=none; b=dAConHCxEkUqKomvzj81AHvmnueWeZlIS/X9iRAC2s4dSa8HgLO+kh8GqxwlgbeCY29ah7 TumI1rLZrZJ9puyCZ/+VstYb5ciLwh+cmX56QWg0AHgjGC+l1MWCw3UTfjtl6j3zR9KaUj pdPtaRxvEr+FmCt6WC8HbPrwGLWOHPwilUCioLk8X+WisFhiKi+GpGnSRsioQd0zRAU3MM dPep6Jxe3PIU63iBm5jN0n5cPxKT1j35Wh7nZhWCwyxSViJIjRBOTodpbLWMds7EUsp/yo mLCkwZS+ZTzbZM8BUxoaChsZ3RwPddHlC5KxSAifAAPWaH0sjo/R0so+Ld5aOw== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b="ZXq/kIV3"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.67 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b="ZXq/kIV3"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 3C5372B5B4 X-Spam-Score: 5.67 X-Migadu-Scanner: scn0.migadu.com X-TUID: +qWNMoRXdWyL * gnu/packages/bioinformatics.scm (pyicoteo): Delete variable. --- gnu/packages/bioinformatics.scm | 39 --------------------------------- 1 file changed, 39 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bda958f6f5..0fd7844a26 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5405,45 +5405,6 @@ (define-public proteinortho large-scale data and can be applied to hundreds of species at once.") (license license:gpl3+))) -(define-public pyicoteo - (package - (name "pyicoteo") - (version "2.0.7") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://bitbucket.org/regulatorygenomicsupf/pyicoteo.git") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0hz5g8d25lbjy1wpscr490l0lmyvaix893hhax4fxnh1h9w34w8p")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ; does not work with Python 3 - #:tests? #f)) ; there are no tests - (inputs - (list python2-matplotlib)) - (home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo") - (synopsis "Analyze high-throughput genetic sequencing data") - (description - "Pyicoteo is a suite of tools for the analysis of high-throughput genetic -sequencing data. It works with genomic coordinates. There are currently six -different command-line tools: - -@enumerate -@item pyicoregion: for generating exploratory regions automatically; -@item pyicoenrich: for differential enrichment between two conditions; -@item pyicoclip: for calling CLIP-Seq peaks without a control; -@item pyicos: for genomic coordinates manipulation; -@item pyicoller: for peak calling on punctuated ChIP-Seq; -@item pyicount: to count how many reads from N experiment files overlap in a - region file; -@item pyicotrocol: to combine operations from pyicoteo. -@end enumerate\n") - (license license:gpl3+))) - (define-public prodigal (package (name "prodigal") -- 2.36.0