From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp11.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id 6KpuK+6HgGKlmgAAbAwnHQ (envelope-from ) for ; Sun, 15 May 2022 06:56:14 +0200 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp11.migadu.com with LMTPS id oIFiK+6HgGJDdwEA9RJhRA (envelope-from ) for ; Sun, 15 May 2022 06:56:14 +0200 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 6CF0A1B180 for ; Sun, 15 May 2022 06:56:14 +0200 (CEST) Received: from localhost ([::1]:55328 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nq6Id-0008Km-Oa for larch@yhetil.org; Sun, 15 May 2022 00:56:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42894) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nq6GZ-00062W-OV for guix-patches@gnu.org; Sun, 15 May 2022 00:54:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54188) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nq6GZ-0005rN-FF for guix-patches@gnu.org; Sun, 15 May 2022 00:54:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nq6GZ-0003Js-Eg for guix-patches@gnu.org; Sun, 15 May 2022 00:54:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55424] [PATCH 026/602] gnu: Remove python2-warpedlmm. Resent-From: Maxim Cournoyer Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 15 May 2022 04:54:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55424 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55424@debbugs.gnu.org Cc: Maxim Cournoyer Received: via spool by 55424-submit@debbugs.gnu.org id=B55424.165259040112545 (code B ref 55424); Sun, 15 May 2022 04:54:03 +0000 Received: (at 55424) by debbugs.gnu.org; 15 May 2022 04:53:21 +0000 Received: from localhost ([127.0.0.1]:48049 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nq6Ft-0003GG-HM for submit@debbugs.gnu.org; Sun, 15 May 2022 00:53:21 -0400 Received: from mail-qt1-f177.google.com ([209.85.160.177]:46819) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nq6Fq-0003Fb-G7 for 55424@debbugs.gnu.org; Sun, 15 May 2022 00:53:18 -0400 Received: by mail-qt1-f177.google.com with SMTP id u35so10053628qtc.13 for <55424@debbugs.gnu.org>; Sat, 14 May 2022 21:53:18 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=nG5H5uOUDctzR+5sEvEKO18AqtJJ+NsOmagB2U+tKQA=; b=QYSmQFHCTeue6HLarSh67ALybd7pYZ96LfLrHNQXHZ0lFbjUtwmNTn0E8Y2D+OPFtR rsylfdqqPXpNnsPQlsKbvzvIjNv0ViCjuYXrxLxR3RtDJS3o0+WtyGwPrIsa63A02Otg rmzRQqkhUEtj72YRZK5GM97mDIOoFdHe9MJNWs+nOsS8s0PxtkM1UNp3l9nBfxaWNtyc Qw/egO5uYl/JRQnzpCzsqpZq85w+RZBDBzuOx7tWPyG23f44ej5GmShYWCyt8AguYZ0W TcmlHlnN6sirFgTEju4rbvp2vhXqjUyQFnFliwK+sEyud7AWLORBpDPTjHhcK+3zpxVN 41TQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=nG5H5uOUDctzR+5sEvEKO18AqtJJ+NsOmagB2U+tKQA=; b=yEZK1hDhMbGmXoTtxVGDxTOz4tgSZrzTYnIOMh4g0wNpabGF6QRmxG4h/xOXG0MQ4a S/w7jKMEkkGUR6xXI8YeJBSgJoPTX8Sv+bDulKUlaz3qnEDBOS07HTA96B2lXykGPBHY U5cAGWp5FdqyCNL/mF8MmI3FpQFSnrrvBzVH3kwDfrIoy88qWH4is/SluofVy1zWu3G6 g1E2EhZ2Bq85J0XbR9P388Oh81QSxC7HSTd/FoIuymcVY/29+AYarKrOtUCdj6TqKc5A +oMAiJrwYqnDsNN/yP0MqWhLPKZJkHbgROyJTiy8QGarZQHCR7o4SCmsoE2YgSHABNgx x05Q== X-Gm-Message-State: AOAM533WtGv3CdI23TZa1sN6iMcyQf4PZGJHbCxtcwUI87KDxb8XB2XK liNQb0x/wDvkcJia767S++vD9VNSYIWebg== X-Google-Smtp-Source: ABdhPJzM1WP3F7ykfafeZuIRbCED71rmHqrQCDTlEY0wNnM/f2AySubB8ldmhjsG4M5QKuOqYcTSIw== X-Received: by 2002:a05:620a:1a08:b0:6a0:1c06:d601 with SMTP id bk8-20020a05620a1a0800b006a01c06d601mr8451220qkb.416.1652590031802; Sat, 14 May 2022 21:47:11 -0700 (PDT) Received: from localhost.localdomain (dsl-149-239.b2b2c.ca. [66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.11 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:11 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:53 -0400 Message-Id: <20220515044629.6843-26-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652590574; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=nG5H5uOUDctzR+5sEvEKO18AqtJJ+NsOmagB2U+tKQA=; b=MoxO/gy9tIVrQl1iW7EQmFuIiMFXINLr4KNU0vAZ5LfEY96oAdMbK6SurE54lMNz8R1IAp bY61m5ZLPn7urTKRx/rvRSQlR5UhHOpPuU8bfaUFsok5cx8to2uEHAu2eiR/L7ue+w2FV6 lxo5ohOojoPhiNMKqjeYGwU3JdsymiUfDGI8Tgij6dM5RXKuqv0f92EP+mAZt0gtYBSSfL lYXOWUS2Yu677YZvrNVdhRTUIxYo8xBUmMKaXFOfFN4wCrZ4yrKtrEzyptH+VzSNmC1FtS aNR0/4BTGry9iV+p1gyyPsMHIEMszpjhdlp93Zo/lwXJ/pB0T9H14nhg4LgbfA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652590574; a=rsa-sha256; cv=none; b=FrkN3Ae2gJBZtH1ElWCLKrVznDDuKLTFXgU0Bnps9A/2AFrGTijnj3+1pexOnuprMrU6bd DyTyp5vmZt6hy0qwfLsyYUf12R8DlSqqiw/y9Kkp5A/y/SztMC2T2KuyB3yxPF4FJgtTWY y4W8KV7D2jXeZmH0G7cehct78muhrJyZFrE9IAu74X4RFra/81OAwlKrFCdBDFJQjaCj1K R8ttFS+1BsmFH+vvkas3dbFYOpbnxeOgZaePD0rTHKtyPtVK1XutGUBUXDKdFqU5911EUL gld0/QzvhkkzTnVP4vBuYj1D59m+6mQ+u45Bsm9TlDNxEgb2TFbdXrU+DwU4Gw== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=QYSmQFHC; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.67 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=QYSmQFHC; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 6CF0A1B180 X-Spam-Score: 5.67 X-Migadu-Scanner: scn0.migadu.com X-TUID: 2Ftf+qAlNCuW * gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable. --- gnu/packages/bioinformatics.scm | 41 --------------------------------- 1 file changed, 41 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c70b9e3aa7..b0ad03612e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5365,47 +5365,6 @@ (define-public python2-pbcore files and writing bioinformatics applications.") (license license:bsd-3))) -(define-public python2-warpedlmm - (package - (name "python2-warpedlmm") - (version "0.21") - (source - (origin - (method url-fetch) - (uri (pypi-uri "WarpedLMM" version ".zip")) - (sha256 - (base32 - "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ; requires Python 2.7 - #:tests? #f ; test data are not included - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-weave - (lambda _ - (substitute* "warpedlmm/util/linalg.py" - (("from scipy import linalg, weave") - "from scipy import linalg\nimport weave")) - #t))))) - (propagated-inputs - (list python2-scipy - python2-numpy - python2-matplotlib - python2-fastlmm - python2-pandas - python2-pysnptools - python2-weave)) - (native-inputs - (list python2-mock python2-nose unzip)) - (home-page "https://github.com/PMBio/warpedLMM") - (synopsis "Implementation of warped linear mixed models") - (description - "WarpedLMM is a Python implementation of the warped linear mixed model, -which automatically learns an optimal warping function (or transformation) for -the phenotype as it models the data.") - (license license:asl2.0))) - (define-public prank (package (name "prank") -- 2.36.0