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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.06 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:07 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:47 -0400 Message-Id: <20220515044629.6843-20-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652590940; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=tN+GBLC8qC1+iOPFJUrwf0kT2aAtDExSimYoOTq15Dg=; b=sXVqGwInmIhuqU0sEchn/U98FEwnHuIeWzjEII3V5vfiUMQ7ZbCUOGq0jgxpzMQgw5NNy+ e1+J08JHsCV1epdTfSqhOJLmn47oym/p+o63lFI3Q8RCS2DSIqD87tPfFiT1VqRVZK5poA njbHnnrcQK8MXTQhiCHy78mf+o8f1Htbl/26qb35z/+mHyHamjfpnCpIXXMSV36uRJF/Sx Ffz1YDidv6JjMaf59OK2fgevgMWd0EcQtoaDYC57cLE8qRHvx7U4ZKELIidv/c927YvEwG rIxqrKUOTc/DRkf80VtkuxPM2BJbT/0Os7dxb+vQLNcpKHhO1sH5BPM3bmLTKg== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652590940; a=rsa-sha256; cv=none; b=uBzsZxMwM5nFujPQQqwrIGsTh/tfyS+fGnfFgwug0VC9T4rATgsRU8ofYIqtkKUMwUX047 WLRJnrBmlRwfOWqsfNGI6o8fMFGUPB86A5gJ4qtJ92Wrm2EgtiVmXvY+jNSWggaFFRn06A ya/jx00/VIvH6TL4eFcUMqJVzNdCZ4PCbchlZ2r1kDuDuCjYvLFp/+FOptOvLd6YKYbIFM CUSxL9+PzleWjDkIOuVMOcwJhw9XdnJAzX1FLHUUSfVjqSqNX4v7Ec8kUV9OFc1bKglwWf VJhYgAucw6zUzcii3qwTEbbOwLQUqRZnWJAOkdwKRkRWAEH+9ydN+VtOp8lBXQ== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=f48YreVZ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.17 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=f48YreVZ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 710D61B408 X-Spam-Score: 6.17 X-Migadu-Scanner: scn0.migadu.com X-TUID: QSs4iZ7BVg1I * gnu/packages/bioinformatics.scm (pepr): Delete variable. --- gnu/packages/bioinformatics.scm | 26 -------------------------- 1 file changed, 26 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 72d033888f..250d075b6e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8726,32 +8726,6 @@ (define-public piranha may optionally be provided to further inform the peak-calling process.") (license license:gpl3+)))) -(define-public pepr - (package - (name "pepr") - (version "1.0.9") - (source (origin - (method url-fetch) - (uri (pypi-uri "PePr" version)) - (sha256 - (base32 - "0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ; python2 only - #:tests? #f)) ; no tests included - (propagated-inputs - (list python2-numpy python2-scipy python2-pysam)) - (home-page "https://github.com/shawnzhangyx/PePr") - (synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data") - (description - "PePr is a ChIP-Seq peak calling or differential binding analysis tool -that is primarily designed for data with biological replicates. It uses a -negative binomial distribution to model the read counts among the samples in -the same group, and look for consistent differences between ChIP and control -group or two ChIP groups run under different conditions.") - (license license:gpl3+))) - (define-public filevercmp (let ((commit "1a9b779b93d0b244040274794d402106907b71b7") (revision "1")) -- 2.36.0