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From: "Paul A. Patience" <paul@apatience.com>
To: 50080@debbugs.gnu.org
Cc: "Paul A. Patience" <paul@apatience.com>
Subject: [bug#50080] [PATCH v3 1/4] gnu: petsc-openmpi: Fix header inclusions.
Date: Mon, 02 May 2022 13:28:28 +0000	[thread overview]
Message-ID: <20220502132806.614632-2-paul@apatience.com> (raw)
In-Reply-To: <20220502132806.614632-1-paul@apatience.com>

* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.
---
 gnu/packages/maths.scm | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index fcd9c5482f..2922d95a70 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -3174,7 +3174,16 @@ (define-public petsc-openmpi
                   (("libptesmumps") "libesmumps")
                   (("libptscotchparmetis") "libptscotchparmetisv3"))))
             (add-before 'configure 'mpi-setup
-              #$%openmpi-setup)))))
+              #$%openmpi-setup)
+            (add-after 'install 'patch-header-inclusions
+              ;; TODO: Replace with ‘patch-header-inclusions’ when (some form
+              ;; of) https://issues.guix.gnu.org/54780#19 is merged.
+              (lambda _
+                (substitute* (string-append #$output "/include/petsclayouthdf5.h")
+                  (("<(H5Ipublic.h)>" _ header)
+                   (format #f "<~a/include/~a>"
+                           #$(this-package-input "hdf5-parallel-openmpi")
+                           header)))))))))
     (synopsis "Library to solve PDEs (with MUMPS and MPI support)")))

 (define-public petsc-complex-openmpi
--
2.36.0






  reply	other threads:[~2022-05-02 13:29 UTC|newest]

Thread overview: 21+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-08-16 19:36 [bug#50080] [PATCH] gnu: sundials, dealii: Update sundials to 5.7.0 and add to dealii inputs Paul A. Patience
2021-10-21 13:52 ` Paul A. Patience
2022-04-14 18:06 ` [bug#50080] Commit updating SUNDIALS to 6.1.1 Paul A. Patience
2022-04-15  8:50   ` Ludovic Courtès
2022-04-20 14:31     ` Paul A. Patience
2022-04-26 17:46     ` Paul A. Patience
2022-04-26 19:47     ` Paul A. Patience
2022-04-28 10:04       ` Ludovic Courtès
2022-04-28 17:11 ` [bug#50080] [PATCH v2 0/4] gnu: sundials: Fix various issues and update to 6.2.0 Paul A. Patience
2022-04-28 17:11   ` [bug#50080] [PATCH v2 1/4] gnu: petsc-openmpi: Fix inputs Paul A. Patience
2022-04-30  9:02     ` Maxime Devos
2022-05-02 13:56       ` Paul A. Patience
2022-04-28 17:11   ` [bug#50080] [PATCH v2 2/4] gnu: sundials: Fix various issues Paul A. Patience
2022-04-28 17:11   ` [bug#50080] [PATCH v2 3/4] gnu: sundials-openmpi: Add HYPRE dependency Paul A. Patience
2022-04-28 17:11   ` [bug#50080] [PATCH v2 4/4] gnu: sundials: Update to 6.2.0 Paul A. Patience
2022-05-02 13:28 ` [bug#50080] [PATCH v3 0/4] gnu: sundials: Fix various issues and update " Paul A. Patience
2022-05-02 13:28   ` Paul A. Patience [this message]
2022-05-02 13:28   ` [bug#50080] [PATCH v3 2/4] gnu: sundials: Fix various issues Paul A. Patience
2022-05-02 13:28   ` [bug#50080] [PATCH v3 3/4] gnu: sundials-openmpi: Add HYPRE dependency Paul A. Patience
2022-05-02 13:28   ` [bug#50080] [PATCH v3 4/4] gnu: sundials: Update to 6.2.0 Paul A. Patience
2022-05-03 15:35   ` bug#50080: [PATCH] gnu: sundials, dealii: Update sundials to 5.7.0 and add to dealii inputs Ludovic Courtès

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