unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 55219@debbugs.gnu.org
Cc: rekado@elephly.net
Subject: [bug#55219] [PATCH] gnu: Add r-aims.
Date: Mon, 2 May 2022 11:49:55 +0200	[thread overview]
Message-ID: <20220502094955.32309-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-aims): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..17fa746fae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,29 @@ (define-public r-agilp
     ;; GPLv3.
     (license license:gpl3)))
 
+(define-public r-aims
+  (package
+    (name "r-aims")
+    (version "1.28.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AIMS" version))
+              (sha256
+               (base32
+                "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"))))
+    (properties `((upstream-name . "AIMS")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-e1071))
+    (home-page "https://git.bioconductor.org/packages/AIMS")
+    (synopsis
+     "Absolute assignment of breast cancer intrinsic molecular subtype")
+    (description
+     "This package contains the @code{AIMS} implementation.  It contains
+necessary functions to assign the five intrinsic molecular subtypes (Luminal A,
+Luminal B, Her2-enriched, Basal-like, Normal-like).  Assignments could be done
+on individual samples as well as on dataset of gene expression data.")
+    (license license:artistic2.0)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 098f2eea331121905e3c867f478b22cea3510841
-- 
2.36.0





             reply	other threads:[~2022-05-02  9:51 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-05-02  9:49 Mădălin Ionel Patrașcu [this message]
2022-11-24 14:36 ` bug#55219: [PATCH] gnu: Add r-aims Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20220502094955.32309-1-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=55219@debbugs.gnu.org \
    --cc=rekado@elephly.net \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).