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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b=FSHOPYDi; dmarc=fail reason="SPF not aligned (relaxed)" header.from=systemreboot.net (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 7.49 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b=FSHOPYDi; dmarc=fail reason="SPF not aligned (relaxed)" header.from=systemreboot.net (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 3EDFF20F27 X-Spam-Score: 7.49 X-Migadu-Scanner: scn1.migadu.com X-TUID: /K9Cg9Gp7gIM * gnu/packages/bioinformatics.scm (vcflib)[arguments]: In the unpack-submodule-sources phase, look for submodule sources in both inputs and native-inputs. --- gnu/packages/bioinformatics.scm | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d74b8a0eb6..b4d809b4db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14599,15 +14599,17 @@ (define-public vcflib (substitute* "test/Makefile" (("libvcflib.a") "libvcflib.so")))) (add-after 'unpack 'unpack-submodule-sources - (lambda* (#:key inputs #:allow-other-keys) + (lambda* (#:key inputs native-inputs #:allow-other-keys) (let ((unpack (lambda (source target) (mkdir target) (with-directory-excursion target - (if (file-is-directory? (assoc-ref inputs source)) - (copy-recursively (assoc-ref inputs source) ".") - (invoke "tar" "xvf" - (assoc-ref inputs source) - "--strip-components=1")))))) + (let ((source (or (assoc-ref inputs source) + (assoc-ref native-inputs source)))) + (if (file-is-directory? source) + (copy-recursively source ".") + (invoke "tar" "xvf" + source + "--strip-components=1"))))))) (and (unpack "filevercmp-src" "filevercmp") (unpack "fsom-src" "fsom") -- 2.35.1