From: Arun Isaac <arunisaac@systemreboot.net>
To: 55125@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#55125] [PATCH 3/9] gnu: tabixpp: Use build tools specific to the target.
Date: Tue, 26 Apr 2022 18:16:33 +0530 [thread overview]
Message-ID: <20220426124639.17159-3-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Set CC and CXX in
#:make-flags. In the build-libraries phase, use cxx-for-target instead of g++
and ar-for-target instead of ar.
---
gnu/packages/bioinformatics.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6c24c1c26f..e745fa9353 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14279,7 +14279,9 @@ (define-public tabixpp
(inputs
(list htslib zlib))
(arguments
- (list #:make-flags #~(list "HTS_HEADERS="
+ (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
+ (string-append "CXX=" #$(cxx-for-target))
+ "HTS_HEADERS="
(string-append "HTS_LIB="
(search-input-file %build-inputs
"/lib/libhts.a"))
@@ -14291,8 +14293,9 @@ (define-public tabixpp
;; Build shared and static libraries.
(add-after 'build 'build-libraries
(lambda* (#:key inputs #:allow-other-keys)
- (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
- (invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
+ (invoke #$(cxx-for-target)
+ "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
+ (invoke #$(ar-for-target) "rcs" "libtabixpp.a" "tabix.o")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
--
2.35.1
next prev parent reply other threads:[~2022-04-26 12:53 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-04-26 12:44 [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 1/9] gnu: tabixpp: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 2/9] gnu: tabixpp: Use #:make-flags Arun Isaac
2022-04-26 12:46 ` Arun Isaac [this message]
2022-04-26 12:46 ` [bug#55125] [PATCH 4/9] gnu: tabixpp: Add bzip2 and xz to inputs Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 5/9] gnu: fastahack: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 6/9] gnu: fastahack: Use compiler specific to the build target Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 7/9] gnu: vcflib: Use G-expressions Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 8/9] gnu: vcflib: Find submodule sources in native-inputs during cross-compilation Arun Isaac
2022-04-26 12:46 ` [bug#55125] [PATCH 9/9] gnu: vcflib: Set absolute path to pkg-config Arun Isaac
2022-05-07 21:45 ` [bug#55125] [PATCH 0/9] Cross-compile vcflib for RISC-V Ludovic Courtès
2022-05-12 7:57 ` Arun Isaac
2022-05-09 8:31 ` bug#55125: " Efraim Flashner
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