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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b="cw+Fk/zI"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=systemreboot.net (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 7.49 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b="cw+Fk/zI"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=systemreboot.net (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 4D8FD2F5F X-Spam-Score: 7.49 X-Migadu-Scanner: scn1.migadu.com X-TUID: I54yK5ow5bqS * gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the build phase. Move the required make arguments to #:make-flags. Add build-libraries phase. --- gnu/packages/bioinformatics.scm | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 774da809d8..6c24c1c26f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14279,18 +14279,18 @@ (define-public tabixpp (inputs (list htslib zlib)) (arguments - (list #:tests? #f ; There are no tests to run. + (list #:make-flags #~(list "HTS_HEADERS=" + (string-append "HTS_LIB=" + (search-input-file %build-inputs + "/lib/libhts.a")) + "INCLUDES=") + #:tests? #f ; There are no tests to run. #:phases #~(modify-phases %standard-phases (delete 'configure) ; There is no configure phase. - ;; The build phase needs overriding the location of htslib. - (replace 'build + ;; Build shared and static libraries. + (add-after 'build 'build-libraries (lambda* (#:key inputs #:allow-other-keys) - (invoke "make" - (string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a")) - (string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib")) - "HTS_HEADERS=" ; No need to check for headers here. - (string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include"))) (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts") (invoke "ar" "rcs" "libtabixpp.a" "tabix.o"))) (replace 'install -- 2.35.1