From: zimoun <zimon.toutoune@gmail.com>
To: 54790@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#54790] [PATCH 3/3] gnu: Add r-copykat.
Date: Fri, 8 Apr 2022 16:59:54 +0200 [thread overview]
Message-ID: <20220408145954.3345224-3-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20220408145954.3345224-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-copykat): New variable.
---
gnu/packages/bioinformatics.scm | 38 +++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 106b25a50b..e3cca9aab8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9138,6 +9138,44 @@ (define-public r-cellchat
communication networks from scRNA-seq data.")
(license license:gpl3))))
+(define-public r-copykat
+ (let ((commit ;no tag
+ "256de33dfc1b80a1a0ac9e098c5557f95a4e0d53")
+ (revision "0"))
+ (package
+ (name "r-copykat")
+ (version (git-version "1.0.8" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/navinlabcode/copykat")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0ckyqnial3imcqlgd6xfgwk5w977l1i87sx4kdbwdvg40w0vh1j8"))))
+ (properties `((upstream-name . "copykat")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-cluster
+ r-dlm
+ r-gplots
+ r-mcmcpack
+ r-mixtools
+ r-paralleldist
+ r-rcolorbrewer))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/navinlabcode/copykat")
+ (synopsis "Inference of genomic copy number from single cell RNAseq data")
+ (description
+ "This package Copynumber KAryotyping of Tumors infers genomic copy
+number and subclonal structure of human tumors using integrative Bayesian
+approaches to identify genome-wide aneuploidy at 5MB resolution in single
+cells data. It separates tumor cells and tumor subclones from normal cells
+using high-throughput sc-RNAseq data.")
+ (license license:gpl2))))
+
(define-public sambamba
(package
(name "sambamba")
--
2.34.0
next prev parent reply other threads:[~2022-04-08 15:01 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-04-08 14:58 [bug#54790] [PATCH 0/3] Add r-copykat and dependencies zimoun
2022-04-08 14:59 ` [bug#54790] [PATCH 1/3] gnu: Add r-paralleldist zimoun
2022-04-08 14:59 ` [bug#54790] [PATCH 2/3] gnu: Add r-dlm zimoun
2022-04-08 14:59 ` zimoun [this message]
2022-04-11 14:13 ` bug#54790: [PATCH 0/3] Add r-copykat and dependencies Ricardo Wurmus
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