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From: Arun Isaac <arunisaac@systemreboot.net>
To: Efraim Flashner <efraim@flashner.co.il>,
	Maxime Devos <maximedevos@telenet.be>
Cc: 54635@debbugs.gnu.org, Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#54635] [PATCH v2 2/5] gnu: htslib: Add bzip2 and xz to inputs.
Date: Thu, 31 Mar 2022 12:58:46 +0530	[thread overview]
Message-ID: <20220331072849.22417-2-arunisaac@systemreboot.net> (raw)
In-Reply-To: <YkRBijIJ16QKrr5G@3900XT>

htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.

* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4e1028b3ce..2f6f3efb66 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
@@ -4788,7 +4788,7 @@ (define-public htslib
                            "--enable-libcurl"
                            "--enable-s3")))
     (inputs
-     (list curl openssl))
+     (list bzip2 curl openssl xz))
     ;; This is referred to in the pkg-config file as a required library.
     (propagated-inputs
      (list zlib))
-- 
2.34.0





  parent reply	other threads:[~2022-03-31  7:31 UTC|newest]

Thread overview: 28+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-03-30  9:19 [bug#54635] [PATCH 0/5] Add wfmash Arun Isaac
2022-03-30  9:23 ` [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux Arun Isaac
2022-03-30  9:23   ` [bug#54635] [PATCH 2/5] gnu: htslib: Add bzip2 and xz to inputs Arun Isaac
2022-03-30  9:23   ` [bug#54635] [PATCH 3/5] gnu: atomic-queue: Run tests correctly Arun Isaac
2022-03-30  9:23   ` [bug#54635] [PATCH 4/5] gnu: atomic-queue: Do not depend on boost when cross-compiling Arun Isaac
2022-03-30 11:49     ` Maxime Devos
2022-03-31  7:24       ` Arun Isaac
2022-03-30  9:23   ` [bug#54635] [PATCH 5/5] gnu: Add wfmash Arun Isaac
2022-03-30 11:33   ` [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux Maxime Devos
2022-03-31  6:14     ` Arun Isaac
2022-03-30 11:36   ` Maxime Devos
2022-03-30 11:39     ` Efraim Flashner
2022-03-31  6:33       ` Arun Isaac
2022-03-31 11:29         ` Maxime Devos
2022-03-31 12:35         ` Efraim Flashner
2022-03-31  7:28       ` [bug#54635] [PATCH v2 " Arun Isaac
2022-03-31  7:28       ` Arun Isaac [this message]
2022-03-31  7:28       ` [bug#54635] [PATCH v2 3/5] gnu: atomic-queue: Run tests correctly Arun Isaac
2022-03-31  7:28       ` [bug#54635] [PATCH v2 4/5] gnu: atomic-queue: Do not look for boost when cross-compiling Arun Isaac
2022-03-31  7:28       ` [bug#54635] [PATCH v2 5/5] gnu: Add wfmash Arun Isaac
2022-03-31 11:34         ` Maxime Devos
2022-03-31 12:18           ` Efraim Flashner
2022-03-31 13:07             ` Maxime Devos
2022-03-31 13:09               ` Efraim Flashner
2022-03-31 13:31               ` bug#54635: " Efraim Flashner
2022-04-01  7:40                 ` [bug#54635] " Arun Isaac
2022-04-01  9:39                   ` Maxime Devos
2022-04-04 18:01                     ` Arun Isaac

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