From: Arun Isaac <arunisaac@systemreboot.net>
To: 54635@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>,
Efraim Flashner <efraim@flashner.co.il>
Subject: [bug#54635] [PATCH 2/5] gnu: htslib: Add bzip2 and xz to inputs.
Date: Wed, 30 Mar 2022 14:53:10 +0530 [thread overview]
Message-ID: <20220330092313.23584-2-arunisaac@systemreboot.net> (raw)
In-Reply-To: <20220330092313.23584-1-arunisaac@systemreboot.net>
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.
* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4e1028b3ce..2f6f3efb66 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,7 +8,7 @@
;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
@@ -4788,7 +4788,7 @@ (define-public htslib
"--enable-libcurl"
"--enable-s3")))
(inputs
- (list curl openssl))
+ (list bzip2 curl openssl xz))
;; This is referred to in the pkg-config file as a required library.
(propagated-inputs
(list zlib))
--
2.34.0
next prev parent reply other threads:[~2022-03-30 9:24 UTC|newest]
Thread overview: 28+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-03-30 9:19 [bug#54635] [PATCH 0/5] Add wfmash Arun Isaac
2022-03-30 9:23 ` [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux Arun Isaac
2022-03-30 9:23 ` Arun Isaac [this message]
2022-03-30 9:23 ` [bug#54635] [PATCH 3/5] gnu: atomic-queue: Run tests correctly Arun Isaac
2022-03-30 9:23 ` [bug#54635] [PATCH 4/5] gnu: atomic-queue: Do not depend on boost when cross-compiling Arun Isaac
2022-03-30 11:49 ` Maxime Devos
2022-03-31 7:24 ` Arun Isaac
2022-03-30 9:23 ` [bug#54635] [PATCH 5/5] gnu: Add wfmash Arun Isaac
2022-03-30 11:33 ` [bug#54635] [PATCH 1/5] gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux Maxime Devos
2022-03-31 6:14 ` Arun Isaac
2022-03-30 11:36 ` Maxime Devos
2022-03-30 11:39 ` Efraim Flashner
2022-03-31 6:33 ` Arun Isaac
2022-03-31 11:29 ` Maxime Devos
2022-03-31 12:35 ` Efraim Flashner
2022-03-31 7:28 ` [bug#54635] [PATCH v2 " Arun Isaac
2022-03-31 7:28 ` [bug#54635] [PATCH v2 2/5] gnu: htslib: Add bzip2 and xz to inputs Arun Isaac
2022-03-31 7:28 ` [bug#54635] [PATCH v2 3/5] gnu: atomic-queue: Run tests correctly Arun Isaac
2022-03-31 7:28 ` [bug#54635] [PATCH v2 4/5] gnu: atomic-queue: Do not look for boost when cross-compiling Arun Isaac
2022-03-31 7:28 ` [bug#54635] [PATCH v2 5/5] gnu: Add wfmash Arun Isaac
2022-03-31 11:34 ` Maxime Devos
2022-03-31 12:18 ` Efraim Flashner
2022-03-31 13:07 ` Maxime Devos
2022-03-31 13:09 ` Efraim Flashner
2022-03-31 13:31 ` bug#54635: " Efraim Flashner
2022-04-01 7:40 ` [bug#54635] " Arun Isaac
2022-04-01 9:39 ` Maxime Devos
2022-04-04 18:01 ` Arun Isaac
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