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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b=fn7nwUJQ; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: 3.01 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=systemreboot.net header.s=default header.b=fn7nwUJQ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=systemreboot.net (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 72A1A32D16 X-Spam-Score: 3.01 X-Migadu-Scanner: scn1.migadu.com X-TUID: YtxgaSPz1dyz * gnu/packages/bioinformatics.scm (ccwl): New variable. --- gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 67335daead..ec34ff0916 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -142,6 +142,7 @@ (define-module (gnu packages bioinformatics) #:use-module (gnu packages ruby) #:use-module (gnu packages serialization) #:use-module (gnu packages shells) + #:use-module (gnu packages skribilo) #:use-module (gnu packages sphinx) #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) @@ -15886,3 +15887,37 @@ (define-public r-cytonorm control samples and applying quantile normalization on all markers of interest.") (license license:gpl2+)))) + +(define-public ccwl + (package + (name "ccwl") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://ccwl.systemreboot.net/releases/ccwl-" + version ".tar.lz")) + (sha256 + (base32 + "1ar8rfz3zrksgygrv67zv77y8gfvvz54zcs546jn6j28y20basla")))) + (build-system gnu-build-system) + (arguments + '(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings + (inputs + `(("guile" ,guile-3.0) + ("guile-libyaml" ,guile-libyaml))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("lzip" ,lzip) + ;; To build documentation + ("cwltool" ,cwltool) + ("graphviz" ,graphviz) + ("skribilo" ,skribilo))) + (home-page "https://ccwl.systemreboot.net") + (synopsis "Concise common workflow language") + (description "The @acronym{ccwl, Concise Common Workflow Language} is a +concise syntax to express CWL workflows. ccwl is a compiler to generate CWL +workflows from concise descriptions in ccwl. It is implemented as an +@acronym{EDSL, Embedded Domain Specific Language} in the Scheme programming +language.") + (license license:gpl3+))) -- 2.34.0