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From: Felix Gruber <felgru@posteo.net>
To: 50813@debbugs.gnu.org, "Ludovic Courtès" <ludo@gnu.org>
Cc: Felix Gruber <felgru@posteo.net>
Subject: [bug#50813] [PATCH v2 6/6] gnu: clipper: Disable non-deterministic test.
Date: Sun, 10 Oct 2021 15:04:34 +0000	[thread overview]
Message-ID: <20211010150434.1966-7-felgru@posteo.net> (raw)
In-Reply-To: <87zgrldwzk.fsf@gnu.org>

This test fails/succeeds non-deterministically.

* gnu/packages/bioinformatics.scm (clipper)[arguments]: Disable
  non-deterministic test test_get_FDR_cutoff_mean.
---
 gnu/packages/bioinformatics.scm | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 082e47bf5b..7dec74f0c0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22,6 +22,7 @@
 ;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
 ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
+;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2363,7 +2364,13 @@ databases.")
              (let ((out (assoc-ref outputs "out")))
                (for-each make-file-writable
                          (find-files out "\\.gz$"))
-               #t))))))
+               #t)))
+         (add-after 'unpack 'disable-nondeterministic-test
+           (lambda _
+             ;; This test fails/succeeds non-deterministically.
+             (substitute* "clipper/test/test_call_peak.py"
+               (("test_get_FDR_cutoff_mean") "_test_get_FDR_cutoff_mean"))
+             #t)))))
     (inputs
      `(("htseq" ,htseq)
        ("python-pybedtools" ,python-pybedtools)
-- 
2.30.2





      parent reply	other threads:[~2021-10-10 15:46 UTC|newest]

Thread overview: 15+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-09-26  9:47 [bug#50813] [PATCH] gnu: python-pandas: Update to 1.3.3 Felix Gruber
2021-10-07  9:07 ` Ludovic Courtès
2021-10-10 15:04   ` [bug#50813] [PATCH v2 0/6] " Felix Gruber
2021-10-12 13:28     ` Greg Hogan
2021-10-12 14:52     ` bug#50813: [PATCH] " Ludovic Courtès
2021-10-10 15:04   ` [bug#50813] [PATCH v2 1/6] " Felix Gruber
2021-10-10 15:04   ` [bug#50813] [PATCH v2 2/6] gnu: python-dask: Update to 2021.9.1 Felix Gruber
2021-10-10 15:04   ` [bug#50813] [PATCH v2 3/6] gnu: python-distributed: Update to 2021.09.1 Felix Gruber
2021-10-10 15:04   ` [bug#50813] [PATCH v2 4/6] gnu: python-eliot: Update to 1.13.0 Felix Gruber
2021-10-10 15:04   ` [bug#50813] [PATCH v2 5/6] gnu: synapse: Update to 1.44.0 Felix Gruber
2021-10-13 12:01     ` Michael Rohleder
2021-10-13 16:33       ` Felix Gruber
2021-10-14  4:25         ` Michael Rohleder
2021-10-14 19:08           ` Felix Gruber
2021-10-10 15:04   ` Felix Gruber [this message]

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