From: zimoun <zimon.toutoune@gmail.com>
To: 50570@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#50570] [PATCH 2/2] gnu: Add r-presto.
Date: Mon, 13 Sep 2021 16:20:28 +0200 [thread overview]
Message-ID: <20210913142028.522087-2-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210913142028.522087-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-presto): New variable.
---
gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c3ab0ce354..647feff9ec 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21,6 +21,7 @@
;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
+;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -7417,6 +7418,39 @@ sequence.")
(supported-systems '("i686-linux" "x86_64-linux"))
(license license:bsd-3)))
+(define-public r-presto
+ (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
+ (revision "0"))
+ (package
+ (name "r-presto")
+ (version (git-version "1.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/immunogenomics/presto")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8"))))
+ (properties `((upstream . "presto")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-deseq2" ,r-deseq2)
+ ("r-dplyr" ,r-dplyr)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rlang" ,r-rlang)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "https://github.com/immunogenomics/presto")
+ (synopsis "Fast Functions for Differential Expression using Wilcox and AUC")
+ (description "This package performs a fast Wilcoxon rank sum test and
+auROC analysis.")
+ (license license:gpl3))))
+
(define-public r-snapatac
(package
(name "r-snapatac")
--
2.32.0
next prev parent reply other threads:[~2021-09-13 14:29 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-09-13 14:18 [bug#50570] [PATCH 0/2] R packages zimoun
2021-09-13 14:20 ` [bug#50570] [PATCH 1/2] gnu: Add r-simplifyenrichment zimoun
2021-09-13 14:20 ` zimoun [this message]
2021-09-20 20:13 ` bug#50570: [PATCH 0/2] R packages Ricardo Wurmus
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