From: zimoun <zimon.toutoune@gmail.com>
To: 50570@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#50570] [PATCH 1/2] gnu: Add r-simplifyenrichment.
Date: Mon, 13 Sep 2021 16:20:27 +0200 [thread overview]
Message-ID: <20210913142028.522087-1-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210913141812.521898-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 25202410e5..e59ba07d23 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4236,6 +4236,46 @@ purposes. The package also contains legacy support for early single-end,
ungapped alignment formats.")
(license license:artistic2.0)))
+(define-public r-simplifyenrichment
+ (package
+ (name "r-simplifyenrichment")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "simplifyEnrichment" version))
+ (sha256
+ (base32
+ "0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh"))))
+ (properties
+ `((upstream-name . "simplifyEnrichment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-circlize" ,r-circlize)
+ ("r-clue" ,r-clue)
+ ("r-cluster" ,r-cluster)
+ ("r-complexheatmap" ,r-complexheatmap)
+ ("r-digest" ,r-digest)
+ ("r-getoptlong" ,r-getoptlong)
+ ("r-go-db" ,r-go-db)
+ ("r-gosemsim" ,r-gosemsim)
+ ("r-matrix" ,r-matrix)
+ ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+ ("r-proxyc" ,r-proxyc)
+ ("r-slam" ,r-slam)
+ ("r-tm" ,r-tm)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/jokergoo/simplifyEnrichment")
+ (synopsis "Simplify Functional Enrichment Results")
+ (description "This package provides a new clustering algorithm, binary
+cut, for clustering similarity matrices of functional terms is implemeted in
+this package. It also provideds functionalities for visualizing, summarizing
+and comparing the clusterings.")
+ (license license:expat)))
+
+
(define-public r-trajectoryutils
(package
(name "r-trajectoryutils")
--
2.32.0
next prev parent reply other threads:[~2021-09-13 14:45 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-09-13 14:18 [bug#50570] [PATCH 0/2] R packages zimoun
2021-09-13 14:20 ` zimoun [this message]
2021-09-13 14:20 ` [bug#50570] [PATCH 2/2] gnu: Add r-presto zimoun
2021-09-20 20:13 ` bug#50570: [PATCH 0/2] R packages Ricardo Wurmus
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