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From: zimoun <zimon.toutoune@gmail.com>
To: 47156@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 14:01:33 +0100	[thread overview]
Message-ID: <20210315130134.30302-8-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210315130134.30302-1-zimon.toutoune@gmail.com>

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
---
 gnu/packages/bioconductor.scm   | 30 ++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 30 ------------------------------
 2 files changed, 30 insertions(+), 30 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 53f025ec61..b4456d13c8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1712,6 +1712,36 @@ exploration of the results.")
 high-throughput sequencing experiments.")
     (license license:artistic2.0)))
 
+(define-public r-genomeinfodb
+  (package
+    (name "r-genomeinfodb")
+    (version "1.26.2")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "GenomeInfoDb" version))
+              (sha256
+               (base32
+                "092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
+    (properties
+     `((upstream-name . "GenomeInfoDb")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-genomeinfodbdata" ,r-genomeinfodbdata)
+       ("r-iranges" ,r-iranges)
+       ("r-rcurl" ,r-rcurl)
+       ("r-s4vectors" ,r-s4vectors)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/GenomeInfoDb")
+    (synopsis "Utilities for manipulating chromosome identifiers")
+    (description
+     "This package contains data and functions that define and allow
+translation between different chromosome sequence naming conventions (e.g.,
+\"chr1\" versus \"1\"), including a function that attempts to place sequence
+names in their natural, rather than lexicographic, order.")
+    (license license:artistic2.0)))
+
 (define-public r-gostats
   (package
     (name "r-gostats")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 25ade2b9db..ff6996011e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,36 +7691,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf")
     (license license:expat)))
 
-(define-public r-genomeinfodb
-  (package
-    (name "r-genomeinfodb")
-    (version "1.26.2")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "GenomeInfoDb" version))
-              (sha256
-               (base32
-                "092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
-    (properties
-     `((upstream-name . "GenomeInfoDb")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biocgenerics" ,r-biocgenerics)
-       ("r-genomeinfodbdata" ,r-genomeinfodbdata)
-       ("r-iranges" ,r-iranges)
-       ("r-rcurl" ,r-rcurl)
-       ("r-s4vectors" ,r-s4vectors)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/GenomeInfoDb")
-    (synopsis "Utilities for manipulating chromosome identifiers")
-    (description
-     "This package contains data and functions that define and allow
-translation between different chromosome sequence naming conventions (e.g.,
-\"chr1\" versus \"1\"), including a function that attempts to place sequence
-names in their natural, rather than lexicographic, order.")
-    (license license:artistic2.0)))
-
 (define-public r-edger
   (package
     (name "r-edger")
-- 
2.30.1





  parent reply	other threads:[~2021-03-15 13:03 UTC|newest]

Thread overview: 12+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-03-15 12:58 [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 02/10] gnu: r-biocviews: " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 03/10] gnu: r-biocstyle: " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 04/10] gnu: r-bioccheck: " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 05/10] gnu: r-s4vectors: " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 06/10] gnu: r-iranges: " zimoun
2021-03-15 13:01   ` [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: " zimoun
2021-03-15 13:01   ` zimoun [this message]
2021-03-15 13:01   ` [bug#47156] [PATCH 09/10] gnu: r-edger: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 10/10] gnu: r-variantannotation: " zimoun
2021-03-15 13:09 ` bug#47156: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus

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