From: zimoun <zimon.toutoune@gmail.com>
To: 47156@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 14:01:33 +0100 [thread overview]
Message-ID: <20210315130134.30302-8-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210315130134.30302-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 30 ------------------------------
2 files changed, 30 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 53f025ec61..b4456d13c8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1712,6 +1712,36 @@ exploration of the results.")
high-throughput sequencing experiments.")
(license license:artistic2.0)))
+(define-public r-genomeinfodb
+ (package
+ (name "r-genomeinfodb")
+ (version "1.26.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomeInfoDb" version))
+ (sha256
+ (base32
+ "092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
+ (properties
+ `((upstream-name . "GenomeInfoDb")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomeinfodbdata" ,r-genomeinfodbdata)
+ ("r-iranges" ,r-iranges)
+ ("r-rcurl" ,r-rcurl)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/GenomeInfoDb")
+ (synopsis "Utilities for manipulating chromosome identifiers")
+ (description
+ "This package contains data and functions that define and allow
+translation between different chromosome sequence naming conventions (e.g.,
+\"chr1\" versus \"1\"), including a function that attempts to place sequence
+names in their natural, rather than lexicographic, order.")
+ (license license:artistic2.0)))
+
(define-public r-gostats
(package
(name "r-gostats")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 25ade2b9db..ff6996011e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,36 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-genomeinfodb
- (package
- (name "r-genomeinfodb")
- (version "1.26.2")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomeInfoDb" version))
- (sha256
- (base32
- "092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
- (properties
- `((upstream-name . "GenomeInfoDb")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-genomeinfodbdata" ,r-genomeinfodbdata)
- ("r-iranges" ,r-iranges)
- ("r-rcurl" ,r-rcurl)
- ("r-s4vectors" ,r-s4vectors)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/GenomeInfoDb")
- (synopsis "Utilities for manipulating chromosome identifiers")
- (description
- "This package contains data and functions that define and allow
-translation between different chromosome sequence naming conventions (e.g.,
-\"chr1\" versus \"1\"), including a function that attempts to place sequence
-names in their natural, rather than lexicographic, order.")
- (license license:artistic2.0)))
-
(define-public r-edger
(package
(name "r-edger")
--
2.30.1
next prev parent reply other threads:[~2021-03-15 13:03 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-15 12:58 [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 02/10] gnu: r-biocviews: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 03/10] gnu: r-biocstyle: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 04/10] gnu: r-bioccheck: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 05/10] gnu: r-s4vectors: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 06/10] gnu: r-iranges: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: " zimoun
2021-03-15 13:01 ` zimoun [this message]
2021-03-15 13:01 ` [bug#47156] [PATCH 09/10] gnu: r-edger: " zimoun
2021-03-15 13:01 ` [bug#47156] [PATCH 10/10] gnu: r-variantannotation: " zimoun
2021-03-15 13:09 ` bug#47156: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
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