From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:c151::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id WD4BLLLTQmBrXAAA0tVLHw (envelope-from ) for ; Sat, 06 Mar 2021 00:58:26 +0000 Received: from aspmx2.migadu.com ([2001:41d0:2:c151::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id IIKuJ7LTQmARHQAAbx9fmQ (envelope-from ) for ; Sat, 06 Mar 2021 00:58:26 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx2.migadu.com (Postfix) with ESMTPS id 24C4D25C7C for ; Sat, 6 Mar 2021 01:58:26 +0100 (CET) Received: from localhost ([::1]:57524 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lILGz-0006la-6O for larch@yhetil.org; Fri, 05 Mar 2021 19:58:25 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46400) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lILGd-0006jy-0A for guix-patches@gnu.org; Fri, 05 Mar 2021 19:58:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:52430) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lILGb-0007ku-MN for guix-patches@gnu.org; Fri, 05 Mar 2021 19:58:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lILGb-0001aY-KB for guix-patches@gnu.org; Fri, 05 Mar 2021 19:58:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#46955] [PATCH 1/2] gnu: Add python-sparse. References: <76dfa82e-53e2-c4fc-d002-df71f348cdc8@mdc-berlin.de> In-Reply-To: <76dfa82e-53e2-c4fc-d002-df71f348cdc8@mdc-berlin.de> Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 06 Mar 2021 00:58:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 46955 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <46955@debbugs.gnu.org> Cc: rekado@elephly.net, =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Received: via spool by 46955-submit@debbugs.gnu.org id=B46955.16149922606070 (code B ref 46955); Sat, 06 Mar 2021 00:58:01 +0000 Received: (at 46955) by debbugs.gnu.org; 6 Mar 2021 00:57:40 +0000 Received: from localhost ([127.0.0.1]:35740 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lILGA-0001Ze-8p for submit@debbugs.gnu.org; Fri, 05 Mar 2021 19:57:40 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:34603) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lILG5-0001ZN-Fv for 46955@debbugs.gnu.org; Fri, 05 Mar 2021 19:57:33 -0500 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 1488F16012B; Sat, 6 Mar 2021 01:57:23 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1614992242; x=1616806643; bh=tulqpNiVy4P5FQDA4wI7NaUj7QfgFIQVzLR5oYvja6o=; b=h2/lgetSpXLE y8KdVea6t/dbskPKh/L+/oISWNmmyME9etV7aiInNNwjTGSE1cFA45duhdq7Dd1Q 4JtMcPWvx+5VS5l5vlHhXyytScNnUnjZeLp82wLZSJL9km41R/u7MhNuowszrtx1 1UN9lUUsjQX61uEsgqpNl+Pi8bwdAvQ= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id RtFq4BUYj4dC; Sat, 6 Mar 2021 01:57:22 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS; Sat, 6 Mar 2021 01:57:22 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2176.2; Sat, 6 Mar 2021 01:57:22 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Sat, 6 Mar 2021 01:57:02 +0100 Message-ID: <20210306005703.25479-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 8bit X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3080-8.6.1012-26012.003 X-TM-AS-Result: No-10--3.042000-8.000000 X-TMASE-MatchedRID: gnUNXwFR0uP/R1NSMc2qCXycvC6I0dJIS1zwNuiBtITfUZT83lbkEJwl bZPQQ0yzb1TGnuLRfUkctkosP3yazCq+GZ9ZHxIhUYXhMajr0x53G1bsm5zfjMZygq/CPmrol8w sFD5lRSvmsKqMEsXxJy2+lyx46iL0+5T6zKmlZhdV1zhVw8duYkPIlAqA4/DEvAe75exuTNFErs sMQdxI5OdccNzwjJTWNx3sWO1UiHFnDmHdcAECAMn9tWHiLD2GW1eClGWYNyjnCThanP/ghGJlH 05V7NzjkysQhBKB3lqXwGaqxb4UjqMOL4ljfmzc9FQh3flUIh4Q5L9qu3flQ5cFdomgH0lngxsf zkNRlfLdB/CxWTRRu3aDLLDbFMGF/tsmPRGXdaiD+EnTB7mS6eikSSNrgo8AgJ8EP/L19sL0xVt oJb5gks/YiEgTarFDgTu0lGnM4Bj+Bp7E1Bftcrvpvs9iIwUk1+xhfuuIbsi45jSrrr4GpqGCNX qyLhLFvoNkWY9hSsutAp7vUZi6bw== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.042000-8.000000 X-TMASE-Version: SMEX-14.0.0.3080-8.6.1012-26012.003 X-TM-SNTS-SMTP: 53C155232D36112CF637479049976B7F6D97BD6823FF8BA1EEE9700E04BF6E442000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1614992306; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=+WlRUOD6SbeeM/XR6U17uRswRknwsXUlcNt6naXFVq8=; b=QQkywcT6b1O2XaHYCTJBM0b3ovu8dQ/kE/5LUVtGEfHYqHxkAIFXuUAwuPxT636MpYQuz2 JsPvo49+4uzdPyqkPSUW3LD6TRZc1lxWE6X0uA8mvqcAoIzlRJTyckd2VvWqbSzGH+IU3X KrMyoPr7HBHD2FXQfg//5/XkLWThHHT2RKOmqvb8QTrzeseFykO4RB4ieX9Wik4qA4ATYG nf4L4yuGiiEEW7Psti9RJK7aJfAy0DMqU8aUKjwjkxIwssKcAjTjXZJ0JQ/mTVg8mUJ1Qu zwH9HnvNiRpV7J3Xe9BiGy1Him77q0t22lGOqtk5gZEw3lz/X0ki4dnSWOpz3w== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1614992306; a=rsa-sha256; cv=none; b=DuHa88QGESF6nqjDbQDNyMYVO8o3ljNcGTgQaaNKtf/bJ2o2mNbNbegWvnF/TRxis1B/hv qwhXFCV7cJI2fy2nCCz1Yy4XjWA46bYzUWpjOmodv3K8EsOAXqD+j8ERKrw++niXf0+Fo0 4jXeBpmPh7aw1dETGsdPwFDwLmNtxK9XppqK4pdZG+JKyPAYpuOD4o/jrZJVWMipsvoaPM Bqox865bZ2l2yfX5QTSPWm796Yv1m4IJERtdh4eNMRF+5kUAsH/46FnNWsvOQngSLOS5j5 b/S7i28VCHWuvfhorO8Nx2n96n9vIbf2S/PFb2K/S8dhTFOvIo6P2wptFu9Nvg== ARC-Authentication-Results: i=1; aspmx2.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="h2/lgetS"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -0.27 Authentication-Results: aspmx2.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="h2/lgetS"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 24C4D25C7C X-Spam-Score: -0.27 X-Migadu-Scanner: scn1.migadu.com X-TUID: ZKXUEQooWk8j * gnu/packages/python-xyz.scm (python-sparse): New variable. --- gnu/packages/python-xyz.scm | 41 ++++++++++++++++++++++++++++++++++++- 1 file changed, 40 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index fbc9ad688d..b5274c39a9 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -67,7 +67,7 @@ ;;; Copyright © 2019, 2020 Giacomo Leidi ;;; Copyright © 2019 Wiktor Żelazny ;;; Copyright © 2019, 2020 Tanguy Le Carrour -;;; Copyright © 2019 Mădălin Ionel Patrașcu +;;; Copyright © 2019, 2021 Mădălin Ionel Patrașcu ;;; Copyright © 2020 Riku Viitanen ;;; Copyright © 2020 Jakub Kądziołka ;;; Copyright © 2020 sirgazil @@ -4719,6 +4719,45 @@ objects.") (define-public python2-colormath (package-with-python2 python-colormath)) +(define-public python-sparse + (package + (name "python-sparse") + (version "0.11.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sparse" version)) + (sha256 + (base32 + "0kw6ha83gk0dymayrxhh16xxk7aykiyiz3ksxdzj6hhjr3dkap5w")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numba" ,python-numba) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy))) + (native-inputs + `(("python-dask" ,python-dask) + ("python-pytest" ,python-pytest) + ("python-pytest-black" ,python-pytest-black) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://github.com/pydata/sparse/") + (synopsis "Library for multi-dimensional sparse arrays") + (description + "This package implements sparse arrays of arbitrary dimension on top of +@code{numpy} and @code{scipy.sparse}. Sparse array is a matrix in which most +of the elements are zero. @code{python-sparse} generalizes the +@code{scipy.sparse.coo_matrix} and @code{scipy.sparse.dok_matrix} layouts, but +extends beyond just rows and columns to an arbitrary number of dimensions. +Additionally, this project maintains compatibility with the +@code{numpy.ndarray} interface rather than the @code{numpy.matrix} interface +used in @code{scipy.sparse}. These differences make this project useful in +certain situations where @code{scipy.sparse} matrices are not well suited, but +it should not be considered a full replacement. It lacks layouts that are not +easily generalized like @dfn{compressed sparse row/column}(CSR/CSC) and +depends on @code{scipy.sparse} for some computations.") + ;;https://github.com/pydata/sparse/blob/master/LICENSE + (license license:bsd-3))) + (define-public python-spectra (package (name "python-spectra") -- 2.30.1