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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874681612608 (code B ref 45399); Wed, 23 Dec 2020 18:07:07 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:56 +0000 Received: from localhost ([127.0.0.1]:54100 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8XH-0003HC-TK for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:56 -0500 Received: from mail-wr1-f42.google.com ([209.85.221.42]:44727) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8XA-0003FB-Io for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:49 -0500 Received: by mail-wr1-f42.google.com with SMTP id w5so27997wrm.11 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:48 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=W8SbGmlvD5SUTn2HF809hS3F4V/C4IftpCzqaXVKPSQ=; b=CXkTFlRgiaMXLHOeL1QCJZYY5qlgE1GydLIDvj3HsuXzkpWKAQJJgfUjde1mUlumkK Yzg4CO0ACCBhel4nqwXP0rEfnD/qw3NzoH4B76Dlf9uWVfDYmUaZ5whI1wdC4dj0ZPqa BxGZHCWegN2B9AAy/MVx0QVNem8L93VOIeOD5FSYh4OvHEVYisYxPZJEFDLxjs0NP6zC g+kQFuAsWjV9cvMnHzQln4E4t8jIlMiuZ3vmEjqghreX5rom/GZoygERaDoJrn46mpRo n9+izzmdYUnBQ09mhL8eHJ7oHs/YIZNeEuULCZ+la1n13g9oN9yViTJ5eBzncAvbawSC bUbA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=W8SbGmlvD5SUTn2HF809hS3F4V/C4IftpCzqaXVKPSQ=; b=m8uZe2YSMunLgTKO7ZDEMz4lpxzP2zG8QMuhft6QgUdBkY/cExpFEKUB7itkcZpsFO 0on8ntq3JGhWqF8xKsVejQkZxy9PCbHJA3S7gzHDIEg12pA3ILW7fQWzk+IdpuJcojJK xF3oA6NQidMdQmk+4fcjJ4xX4xqhJYDQXJgkn+dHNmV+7OF6Fv0YM/D5rXQCIQ3GcBJ0 9ShJnnrXABT/fWTMrXSSa6hYKktJ21Z58QcpWVDtmswkAJucCVL0KKmex8GuMMY8RW3l PczRznVxCamZKQXDoCdZgyF2u9/9Nb2A2yNjfv61rVQxVru4jjO3nw+d71rbS/ee1pne w9lg== X-Gm-Message-State: AOAM532mWraGjtcwNSm2r8BxDOfHJXvrsfIk77gKfXqdkIHqS9xNEt5S E2fkYR0Tt1t9dpemqv90Xwo+KasCq0o= X-Google-Smtp-Source: ABdhPJzwVik+uDa4oUq2tgnV/s9ktXXSNdwPmhvmQsyvMBLaSXyqCVrcmDp+hQhx/0VN08gTt5akWA== X-Received: by 2002:adf:9cca:: with SMTP id h10mr30476508wre.77.1608746803038; Wed, 23 Dec 2020 10:06:43 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.42 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:42 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:33 +0100 Message-Id: <20201223180635.58647-9-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com> References: <20201223180635.58647-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=CXkTFlRg; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 6EE709402B6 X-Spam-Score: 2.77 X-Migadu-Scanner: scn1.migadu.com X-TUID: UYY5NT2DGcfk * gnu/packages/bioinformatics.scm (r-snpstats): Move from here... * gnu/packages/bioconductor.scm (r-snpstats): ...to here. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 27 --------------------------- 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3b8dce30e5..ff9e26bbde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9540,6 +9540,33 @@ integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.") (license license:gpl3+))) +(define-public r-snpstats + (package + (name "r-snpstats") + (version "1.40.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "snpStats" version)) + (sha256 + (base32 + "1298a71swwav53yf9kfqkdpach3818plqcbw0lgb6sibs8y8ff24")))) + (properties `((upstream-name . "snpStats"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-matrix" ,r-matrix) + ("r-survival" ,r-survival) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "https://bioconductor.org/packages/snpStats") + (synopsis "Methods for SNP association studies") + (description + "This package provides classes and statistical methods for large +@dfn{single-nucleotide polymorphism} (SNP) association studies. This extends +the earlier snpMatrix package, allowing for uncertainty in genotypes.") + (license license:gpl3))) + (define-public r-sushi (package (name "r-sushi") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2a6ac38505..76236929de 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10596,33 +10596,6 @@ of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL, and more.") (license license:artistic2.0))) -(define-public r-snpstats - (package - (name "r-snpstats") - (version "1.40.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "snpStats" version)) - (sha256 - (base32 - "1298a71swwav53yf9kfqkdpach3818plqcbw0lgb6sibs8y8ff24")))) - (properties `((upstream-name . "snpStats"))) - (build-system r-build-system) - (inputs `(("zlib" ,zlib))) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-matrix" ,r-matrix) - ("r-survival" ,r-survival) - ("r-zlibbioc" ,r-zlibbioc))) - (home-page "https://bioconductor.org/packages/snpStats") - (synopsis "Methods for SNP association studies") - (description - "This package provides classes and statistical methods for large -@dfn{single-nucleotide polymorphism} (SNP) association studies. This extends -the earlier snpMatrix package, allowing for uncertainty in genotypes.") - (license license:gpl3))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.29.2