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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874681412578 (code B ref 45399); Wed, 23 Dec 2020 18:07:04 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:54 +0000 Received: from localhost ([127.0.0.1]:54092 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8XG-0003Gh-0L for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:54 -0500 Received: from mail-wr1-f41.google.com ([209.85.221.41]:43765) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X8-0003F2-6W for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:47 -0500 Received: by mail-wr1-f41.google.com with SMTP id y17so33402wrr.10 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:46 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=gpB9Px+cqqf/Thjv5v3FF4iUPRufvKc0i7Qw1q4Y8TA=; b=aOXGU8UoyA8PHCZ+KuQskDipE9tBjg61pewuFEY0nBdhD0R9NkVgvgwkiHdQ9kf2jB F1G4lUvT5XHXlctdXzf4SRFs79wkLUBiSpAs0XqOpEByZCSbzJhgBbKrfoI9yDtj4T7j kMSp3ZTrRQDT4O6qgtKCNTRKi5zNiZOC+7AU4sVYTGFgjmuf0yUcA7SCSOfbLkEvnTJ2 gEcP5Wl/07aluqN8W8f9zycjw3ztsXqN4+GJ/YbzjTv2LCDOFWXaWQEc1z2epBijTaZW pJuyccHii7Z4EiTSYFkXK2BdhC8lQUtbfeCEwKkMe8AlVcfp8ohbjqbmHZedS/HfOqPH UU8Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=gpB9Px+cqqf/Thjv5v3FF4iUPRufvKc0i7Qw1q4Y8TA=; b=Cwg9Sc4Qghel3d1yLwiJK/HZBZMeISxjm+JAJ1vF14T0Kv6D3vQuOE1L4e69N7rovr 9A3vNjtr/xcHuBw93BySq8hIaJhk42yT/CW0jDXeyYGbhaCIlej7nUtow/atvKeIfTYw 73PylUN1uLSQeOEl9aqaZhRVZdHTX/NH7giL0jTP86ZNX2BUS7NUTiJCm2cahM7qGjA0 LHGeaY2JdsOPAJRRpDROLo+iUbO+rVfvjaRNuYutRXjyMJQ6Y/XpYrQYqz7PnTPiL7Fh Y8TTLME7EzQa8++hmcUPAFkfH4YF+tJxKFletapkD7EIKdVGvMpMZJeGJVxeeFUCkX/J ClMQ== X-Gm-Message-State: AOAM530bKXLyoJMKOXk+TXxGrfKEyGM/aGnh7NrRp6ZMS+tvZdmvL09J Lzpv4qDvHFRcVWaB4J09bbVp4HJyPi0= X-Google-Smtp-Source: ABdhPJy035YJHwhB6jXSxVYQIxOR3LLaCwnJU6rnsRtQZRpgCVoltkpOtbab5YoyNsQNI/XZ0jlP6g== X-Received: by 2002:a05:6000:1d1:: with SMTP id t17mr31495984wrx.164.1608746800645; Wed, 23 Dec 2020 10:06:40 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:40 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:29 +0100 Message-Id: <20201223180635.58647-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com> References: <20201223180635.58647-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=aOXGU8Uo; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 1AC83940483 X-Spam-Score: 2.77 X-Migadu-Scanner: scn0.migadu.com X-TUID: WO82qhYCSG5i * gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here. --- gnu/packages/bioconductor.scm | 56 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 56 --------------------------------- 2 files changed, 56 insertions(+), 56 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 11e9a46b11..1bf9a49272 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,62 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-gqtlstats + (package + (name "r-gqtlstats") + (version "1.21.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gQTLstats" version)) + (sha256 + (base32 + "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl")))) + (properties `((upstream-name . "gQTLstats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-batchjobs" ,r-batchjobs) + ("r-bbmisc" ,r-bbmisc) + ("r-beeswarm" ,r-beeswarm) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-doparallel" ,r-doparallel) + ("r-dplyr" ,r-dplyr) + ("r-erma" ,r-erma) + ("r-ffbase" ,r-ffbase) + ("r-foreach" ,r-foreach) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-ggbeeswarm" ,r-ggbeeswarm) + ("r-ggplot2" ,r-ggplot2) + ("r-gqtlbase" ,r-gqtlbase) + ("r-hardyweinberg" ,r-hardyweinberg) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-mgcv" ,r-mgcv) + ("r-plotly" ,r-plotly) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-snpstats" ,r-snpstats) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/gQTLstats") + (synopsis "Computationally efficient analysis for eQTL and allied studies") + (description + "This package provides tools for the computationally efficient analysis +of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc. +The software in this package aims to support refinements and functional +interpretation of members of a collection of association statistics on a +family of feature/genome hypotheses.") + (license license:artistic2.0))) + (define-public r-gviz (package (name "r-gviz") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index caa505fdab..67b4c4cb73 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10729,62 +10729,6 @@ handling of existing population-level data for the purpose of flexibly defining LD blocks.") (license license:artistic2.0))) -(define-public r-gqtlstats - (package - (name "r-gqtlstats") - (version "1.21.3") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gQTLstats" version)) - (sha256 - (base32 - "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl")))) - (properties `((upstream-name . "gQTLstats"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-batchjobs" ,r-batchjobs) - ("r-bbmisc" ,r-bbmisc) - ("r-beeswarm" ,r-beeswarm) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-doparallel" ,r-doparallel) - ("r-dplyr" ,r-dplyr) - ("r-erma" ,r-erma) - ("r-ffbase" ,r-ffbase) - ("r-foreach" ,r-foreach) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-ggbeeswarm" ,r-ggbeeswarm) - ("r-ggplot2" ,r-ggplot2) - ("r-gqtlbase" ,r-gqtlbase) - ("r-hardyweinberg" ,r-hardyweinberg) - ("r-homo-sapiens" ,r-homo-sapiens) - ("r-iranges" ,r-iranges) - ("r-limma" ,r-limma) - ("r-mgcv" ,r-mgcv) - ("r-plotly" ,r-plotly) - ("r-reshape2" ,r-reshape2) - ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-snpstats" ,r-snpstats) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gQTLstats") - (synopsis "Computationally efficient analysis for eQTL and allied studies") - (description - "This package provides tools for the computationally efficient analysis -of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc. -The software in this package aims to support refinements and functional -interpretation of members of a collection of association statistics on a -family of feature/genome hypotheses.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.29.2