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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874681312563 (code B ref 45399); Wed, 23 Dec 2020 18:07:03 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:53 +0000 Received: from localhost ([127.0.0.1]:54088 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8XF-0003GX-1i for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:53 -0500 Received: from mail-wr1-f43.google.com ([209.85.221.43]:35034) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X6-0003Ez-Th for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:45 -0500 Received: by mail-wr1-f43.google.com with SMTP id r3so78519wrt.2 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:44 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=6u98ShJItMSRCuJDF7f1vxJo+6zTOsfZ4RHre4E4fD4=; b=KdGg/qEtcikDOJzZLyx+iJxukWNK+vu/PCZI+sG320FQaceBa7Xzk6pmetJNxYfjr/ nOGyt/aqd3XVEsFr00NfOoAIkqqiqqlmK95pLFxB91a+dbaf/3/yRfvE9hafWwCPS3O7 CimIkPXPCpwUJqEaNmqAPfECHVbdPD5YMD3/njaktqIoLlvPEYDTxLnfUyzCHtNZZpJw wYVVoRvVput5JOaci2Jez5EEWWl97X3CcFP+lPwwDcKnPl16YJFWbc40hr3UMJCGPbQs yLRSltcHz5V6BoSDpGH1vI1VwArkrnCec5GcNQsRDPhgVMY+ZPJD95bkllDsAwK5YQp7 rBWQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=6u98ShJItMSRCuJDF7f1vxJo+6zTOsfZ4RHre4E4fD4=; b=fJ1SdFc8jlRojsWScea/3SOujbiGq0SYPmgXG9aflvYfCGlMHTcygyLKxWR8rh2ZXM kkqK8ThZL4QigxnAOOCApC3UQMz4GO7cJWXfNZztpFra5/5bI1KsElbxWMz9MT/deEen s7P/a615YuYkr6UrJl0qxl7Ox+vlDjzXFA1P5xF3WEU51I6H21J0/ewBJXU3yG8rzL7s EB04wFZKS5PRQEKv3vQfhwfoNHtCc/mgIecUm2iMC6G2NU27C6vN37A0IHs8b1lqsTC4 z8Yzr/vs2DmjJEvI78iWGlcD4Tm0ql1LNOgrofwO5wMlaWDKBSrLYeB3ltak16XO7EuR 2ymA== X-Gm-Message-State: AOAM532OufBFauWCgjZGe3V557SwPkF3xQ0Er15t7TPKvY7bq3BsEhQg 9Pls9eHRc97An4LJ5ZRprktURCqwydI= X-Google-Smtp-Source: ABdhPJwzvs5DGgAW+7+dyIpu+b50BDBPAoUOrict96Jw0A/ZW/0h0B15C3wABlAL8iNjyND9ed+Xow== X-Received: by 2002:a5d:61c4:: with SMTP id q4mr30678231wrv.304.1608746799430; Wed, 23 Dec 2020 10:06:39 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.38 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:39 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:27 +0100 Message-Id: <20201223180635.58647-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com> References: <20201223180635.58647-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=KdGg/qEt; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 5FAC0940430 X-Spam-Score: 2.77 X-Migadu-Scanner: scn1.migadu.com X-TUID: xTTKa6g4Cq1o * gnu/packages/bioinformatics.scm (r-gwascat): Move from here... * gnu/packages/bioconductor.scm (r-gwascat): ...to here. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 33 --------------------------------- 2 files changed, 33 insertions(+), 33 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3dd34e7f24..970602a32b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,39 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-gwascat + (package + (name "r-gwascat") + (version "2.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gwascat" version)) + (sha256 + (base32 + "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocfilecache" ,r-biocfilecache) + ("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-readr" ,r-readr) + ("r-s4vectors" ,r-s4vectors) + ("r-snpstats" ,r-snpstats) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/gwascat") + (synopsis "Tools for data in the EMBL-EBI GWAS catalog") + (description + "This package provides tools for representing and modeling data in the +EMBL-EBI GWAS catalog.") + (license license:artistic2.0))) + (define-public r-kegggraph (package (name "r-kegggraph") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6ef93d9b62..ab187dcddd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10834,39 +10834,6 @@ grid graphics package. This results in genomic information plotted together with your data.") (license license:artistic2.0))) -(define-public r-gwascat - (package - (name "r-gwascat") - (version "2.22.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gwascat" version)) - (sha256 - (base32 - "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biocfilecache" ,r-biocfilecache) - ("r-biostrings" ,r-biostrings) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-readr" ,r-readr) - ("r-s4vectors" ,r-s4vectors) - ("r-snpstats" ,r-snpstats) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gwascat") - (synopsis "Tools for data in the EMBL-EBI GWAS catalog") - (description - "This package provides tools for representing and modeling data in the -EMBL-EBI GWAS catalog.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.29.2