From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id m8lkOFeH418aIAAA0tVLHw (envelope-from ) for ; Wed, 23 Dec 2020 18:07:19 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id +DGsM1eH41/4YgAA1q6Kng (envelope-from ) for ; Wed, 23 Dec 2020 18:07:19 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 849EA940222 for ; Wed, 23 Dec 2020 18:07:19 +0000 (UTC) Received: from localhost ([::1]:40496 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ks8Xe-0002Oy-FP for larch@yhetil.org; Wed, 23 Dec 2020 13:07:18 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:56862) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ks8XP-0002Ni-98 for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:42559) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ks8XP-0001PY-0k for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ks8XO-0003Hy-RH for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). References: <20201223180338.58588-1-zimon.toutoune@gmail.com> In-Reply-To: <20201223180338.58588-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874680712512 (code B ref 45399); Wed, 23 Dec 2020 18:07:02 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:47 +0000 Received: from localhost ([127.0.0.1]:54080 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X8-0003Fe-JJ for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:46 -0500 Received: from mail-wr1-f51.google.com ([209.85.221.51]:35040) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X6-0003Ew-4h for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:45 -0500 Received: by mail-wr1-f51.google.com with SMTP id r3so78463wrt.2 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:44 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=CSQWs/RwKhPbNk4OKKfU3SNdZr6jiTdKVhKpCQqE4VI=; b=WzQKtm9USwxhir5HQeZCKTKAU10elYvIzl6hbkb6frhIUjtIW9nBtQFytjympPZCjt U32/7N1tTFS+0JnniyCpZLY5VpUgXVk8TNYlIwZTHvAIDJiuBTBrFO7z3rHEv1jbLguH axxPfaow2SMvV4k63jqPR+HxNjLQ4ppHdSK/Xx/Kze0vF5knlhz7l05q2hhwaJSuB5+R rvBqkKgY1fYBTuCtYF6RT+5dXToC7wDAwS3iieg/P2lEbLdDgOtful4hWvSSAevr/zJh DbShwJg2qrO3tiiZIfQvdPJBEzqN2Mpl8D/zaQ/eVXFEp0fESMQynkwL0W4xy5YtkkYR DSLw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=CSQWs/RwKhPbNk4OKKfU3SNdZr6jiTdKVhKpCQqE4VI=; b=LL6ynFgvTz6PUxUC76kOqHnyk+Cj0bwE5UEhbgbh9z8wgDNbw0/OFqOv+SdLCbrCBM RGC2d6csUxIconAcUZznhyfRu4K++DYnRoNqPseEbRrhKMdPRM/Uf/fXo/mS43lKmBpn R8QYhcUEcmMrElzsiH37H6O886BuFjSY2KwR12ly7XUgJzLPZG2IiIKUvYwiiFYH4kkZ apQwc9uenNy8wMVNOJ9yjjuOLn3Hh+X0PGM4focxjVvNbeNS1CIQ8FUgpI544yF3+ghp V91MRyW/owi9jLxTqGfQKMVSCLeCCrsQQQPvAjni2LSW2qLqI2X9ESNvHcQ6IxDQYGRD ChLA== X-Gm-Message-State: AOAM5302H5Q31CSHF0DJks+FR2Ngv/C4P80E4rzf52hc6eOLmEppo/fc LMcTPgcGUkH67yl+Z+oBkbv3yY/0kpw= X-Google-Smtp-Source: ABdhPJzwrZz5a+zUhw6DHF8iCdwDNRJNfGWjU/BGHwdF5Jgl2xsPs5io1V1RXfYDMi3o8IVdPNXiHQ== X-Received: by 2002:a5d:4d50:: with SMTP id a16mr29870937wru.43.1608746798372; Wed, 23 Dec 2020 10:06:38 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.37 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:37 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:25 +0100 Message-Id: <20201223180635.58647-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=WzQKtm9U; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 849EA940222 X-Spam-Score: 2.77 X-Migadu-Scanner: scn0.migadu.com X-TUID: Mnsgt7V+QtHK Hi, Janitor [1] patch set. It moves Bioconductor packages from (gnu packages bioinformatics) to (gnu packages bioconductor). Far to be complete; still 7 pacth set like this one are coming... 1: To transfer the Copyright, I use: git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r- Then, after the move, I run: ./pre-inst-env guix build r- --no-grafts ./pre-inst-env guix build r- --no-grafts --check and at the end of the series, I run: make as-derivation to check that "guix pull" is not broken; just in case. Last, I have not carefully checked the imported modules, so it could be possible to perhaps remove couple of #:use-module (gnu packages ) in gnu/packages/bioinformatics.scm. All the best, simon zimoun (10): gnu: r-sushi: Move to (gnu packages bioconductor). gnu: r-gwascat: Move to (gnu packages bioconductor). gnu: r-gviz: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ldblock: Move to (gnu packages bioconductor). gnu: r-erma: Move to (gnu packages bioconductor). gnu: r-homo-sapiens: Move to (gnu packages bioconductor). gnu: r-snpstats: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ggbio: Move to (gnu packages bioconductor). gnu/packages/bioconductor.scm | 400 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 405 -------------------------------- 2 files changed, 400 insertions(+), 405 deletions(-) base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11 -- 2.29.2