From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id YFZmAaKG418LFwAA0tVLHw (envelope-from ) for ; Wed, 23 Dec 2020 18:04:18 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id gHHaOKGG41+/XgAAB5/wlQ (envelope-from ) for ; Wed, 23 Dec 2020 18:04:17 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 52420940222 for ; Wed, 23 Dec 2020 18:04:17 +0000 (UTC) Received: from localhost ([::1]:39892 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ks8Ui-0001LF-9C for larch@yhetil.org; Wed, 23 Dec 2020 13:04:16 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:56292) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ks8UU-0001Kn-CO for guix-patches@gnu.org; Wed, 23 Dec 2020 13:04:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:42511) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ks8UU-0000N0-4A for guix-patches@gnu.org; Wed, 23 Dec 2020 13:04:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ks8UT-0003AP-Ut for guix-patches@gnu.org; Wed, 23 Dec 2020 13:04:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:04:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.160874663912162 (code B ref -1); Wed, 23 Dec 2020 18:04:01 +0000 Received: (at submit) by debbugs.gnu.org; 23 Dec 2020 18:03:59 +0000 Received: from localhost ([127.0.0.1]:54057 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8UQ-0003A6-Vc for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:03:59 -0500 Received: from lists.gnu.org ([209.51.188.17]:34028) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8UO-00039x-CT for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:03:57 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:56266) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ks8UO-0001Jb-7A for guix-patches@gnu.org; Wed, 23 Dec 2020 13:03:56 -0500 Received: from mail-wm1-x32a.google.com ([2a00:1450:4864:20::32a]:38725) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ks8UM-0000JT-JA for guix-patches@gnu.org; Wed, 23 Dec 2020 13:03:56 -0500 Received: by mail-wm1-x32a.google.com with SMTP id g185so190390wmf.3 for ; Wed, 23 Dec 2020 10:03:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=CSQWs/RwKhPbNk4OKKfU3SNdZr6jiTdKVhKpCQqE4VI=; b=uYeI8gNdAXY6zwxDq86YKSoSRmgs6ye93ccCnY+QcupTVnbAVhe2HQvDaV9uuJ379p CoVY+/KP42xxvV3G8BBy8iXcH4cQSFItZstcEHnX2QnexkQlL/GnXbuJ07oezosmgd0J gRb6ci4WvecVCcBQxwLIjRPd1Hu584rx/F0+kgRLWTSVCuOfTfUuaQlr0Jmie4mBCtwK APny4cTK8BzGMHXeEL5ZTn2zYZhaHo50CAWBKQAsXA8ze3WGlLGv/G6FoBxeYkrUk9sl jMg35xW7NzFSUa2/BwAwMHk99fqgrJObrfZI/fYC+h8mgzA/cdl/wifpDVcoCAa70xMv +YAQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=CSQWs/RwKhPbNk4OKKfU3SNdZr6jiTdKVhKpCQqE4VI=; b=sGsbmNuOqXmlBAd74mPDRBOzp3kIcaVDrnNJBFMqv8qBe+CN8zPf+nyLCxwc9UDMQ1 DA6uCAMr+Vj5vFjuN5S/+Kvi18Ab+w1LduCe8+GRKCySqx/LnAuZdj2uwLCb2CMO4sm3 2rKVYTMnZQFK9OQYkoFqPJ31iuOAjYZyr71yWGIRlaeIezQ84+QrpWxapBo1F7zqtD4M OsFuGRKQ2IaP7t8+Ul4toTpGNCSFaEmyJfaMkll+TjS5gft2heqf0Vm2EQWPyxyBzxFT zpRrJnLXGdZDeVthAblOt3//oU97+aoxq7zHC9IGOvwVIoQdq/eqD74aSUcV+GS8xvfq Z6gg== X-Gm-Message-State: AOAM530NGzz6JsR78jAA2lskguAUE2mW8MtAfrK2PrqiCbA550BhVsna AV2mxHRP/9d797yp3psKcg6GXmlCzjw= X-Google-Smtp-Source: ABdhPJw2kdFErSPo6O6UPHctWfA1FKhnLO8X0eKTfZ9o/ocwVWPGWwJXFz6gRIdEiaXKdDBif3t4Pw== X-Received: by 2002:a1c:b742:: with SMTP id h63mr820871wmf.122.1608746632923; Wed, 23 Dec 2020 10:03:52 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id h5sm37512466wrp.56.2020.12.23.10.03.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:03:52 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:03:38 +0100 Message-Id: <20201223180338.58588-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::32a; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x32a.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=uYeI8gNd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 52420940222 X-Spam-Score: 2.77 X-Migadu-Scanner: scn1.migadu.com X-TUID: hVnKYHSOS+f1 Hi, Janitor [1] patch set. It moves Bioconductor packages from (gnu packages bioinformatics) to (gnu packages bioconductor). Far to be complete; still 7 pacth set like this one are coming... 1: To transfer the Copyright, I use: git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r- Then, after the move, I run: ./pre-inst-env guix build r- --no-grafts ./pre-inst-env guix build r- --no-grafts --check and at the end of the series, I run: make as-derivation to check that "guix pull" is not broken; just in case. Last, I have not carefully checked the imported modules, so it could be possible to perhaps remove couple of #:use-module (gnu packages ) in gnu/packages/bioinformatics.scm. All the best, simon zimoun (10): gnu: r-sushi: Move to (gnu packages bioconductor). gnu: r-gwascat: Move to (gnu packages bioconductor). gnu: r-gviz: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ldblock: Move to (gnu packages bioconductor). gnu: r-erma: Move to (gnu packages bioconductor). gnu: r-homo-sapiens: Move to (gnu packages bioconductor). gnu: r-snpstats: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ggbio: Move to (gnu packages bioconductor). gnu/packages/bioconductor.scm | 400 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 405 -------------------------------- 2 files changed, 400 insertions(+), 405 deletions(-) base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11 -- 2.29.2