From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id UH3UK5/Xu19IZgAA0tVLHw (envelope-from ) for ; Mon, 23 Nov 2020 15:39:11 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id ENDZJ5/Xu1/SBgAA1q6Kng (envelope-from ) for ; Mon, 23 Nov 2020 15:39:11 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 301979403CA for ; Mon, 23 Nov 2020 15:39:11 +0000 (UTC) Received: from localhost ([::1]:49780 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1khDvq-0001YJ-1q for larch@yhetil.org; Mon, 23 Nov 2020 10:39:10 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:58684) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1khDvi-0001Xm-Nv for guix-patches@gnu.org; Mon, 23 Nov 2020 10:39:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39190) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1khDvi-000605-GB for guix-patches@gnu.org; Mon, 23 Nov 2020 10:39:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1khDvi-0004Bz-C1 for guix-patches@gnu.org; Mon, 23 Nov 2020 10:39:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#44819] [PATCH 1/2] gnu: Add python-pynndescent. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 23 Nov 2020 15:39:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 44819 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 44819@debbugs.gnu.org Cc: Vinicius Monego X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.160614592116084 (code B ref -1); Mon, 23 Nov 2020 15:39:02 +0000 Received: (at submit) by debbugs.gnu.org; 23 Nov 2020 15:38:41 +0000 Received: from localhost ([127.0.0.1]:50736 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1khDvM-0004BM-N2 for submit@debbugs.gnu.org; Mon, 23 Nov 2020 10:38:40 -0500 Received: from lists.gnu.org ([209.51.188.17]:48806) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1khDvL-0004BF-D9 for submit@debbugs.gnu.org; Mon, 23 Nov 2020 10:38:40 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:58552) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1khDvK-0001MX-B8 for guix-patches@gnu.org; Mon, 23 Nov 2020 10:38:39 -0500 Received: from mout01.posteo.de ([185.67.36.65]:60172) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1khDvE-0005nH-MY for guix-patches@gnu.org; Mon, 23 Nov 2020 10:38:37 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 013DE160063 for ; Mon, 23 Nov 2020 16:38:27 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1606145908; bh=qrgIUc+GIm1SRJtd6p3D3r5Z4S9GCpmLh5Zo7lX256A=; h=From:To:Cc:Subject:Date:From; b=Re2FzKoAanlgNY1IEV1HAkANcDJQ9rfdWDM9b8JJKfvnYo//Qua9FmOTdRPHStiHa yx9RQEvfACI+MlLpQt81PxUN2Z+ZPSSgi3cQPd/sFfrJuZHX24nzG1hiDir/2llAuu phxFAcFjd4fnOnP8BSgEv9NHqgW5axaaw2vMatsi+N7ZzcmpuKm6BThAF5oVUmbXIX LqbkJ9/JrO1O3G6TZgALughQ3JHivtVW8JED6n0+Q60+b0gMucAaGvFxHpTEabUGcF 8+xigm1N8k+vvl0ZigaqtxNTyhSBKcDhvD0sBT51IZcGXYcOM+u7rcGL5+edFKf14E eLdu9d36G0fKQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4CfrsG3C0cz9rxG; Mon, 23 Nov 2020 16:38:26 +0100 (CET) From: Vinicius Monego Date: Mon, 23 Nov 2020 12:38:13 -0300 Message-Id: <20201123153813.15417-1-monego@posteo.net> X-Mailer: git-send-email 2.20.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=185.67.36.65; envelope-from=monego@posteo.net; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -2.3 (--) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=posteo.net header.s=2017 header.b=Re2FzKoA; dmarc=fail reason="SPF not aligned (strict)" header.from=posteo.net (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 5.09 X-TUID: 5nBUg4jSiOzd * gnu/packages/machine-learning.scm (python-pynndescent): New variable. --- Version 0.5.x was released days ago but it changes the API and breaks OpenTSNE tests. gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 34b522c99b..2ad148b48e 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -65,6 +65,7 @@ #:use-module (gnu packages gstreamer) #:use-module (gnu packages image) #:use-module (gnu packages linux) + #:use-module (gnu packages llvm) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) #:use-module (gnu packages ocaml) @@ -869,6 +870,32 @@ data analysis.") (base32 "08zbzi8yx5wdlxfx9jap61vg1malc9ajf576w7a0liv6jvvrxlpj"))))))) +(define-public python-pynndescent + (package + (name "python-pynndescent") + (version "0.4.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pynndescent" version)) + (sha256 + (base32 "0li1fclif50v6xrq7wh3lif9vv5jpj7xhrb0z6g89wwjnp9b9833")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (propagated-inputs + `(("python-joblib" ,python-joblib) + ("python-llvmlite" ,python-llvmlite) + ("python-numba" ,python-numba) + ("python-scikit-learn" ,python-scikit-learn) + ("python-scipy" ,python-scipy))) + (home-page "https://github.com/lmcinnes/pynndescent") + (synopsis "Nearest neighbor descent for approximate nearest neighbors") + (description + "PyNNDescent provides a Python implementation of Nearest Neighbor Descent +for k-neighbor-graph construction and approximate nearest neighbor search.") + (license license:bsd-2))) + (define-public python-scikit-rebate (package (name "python-scikit-rebate") -- 2.20.1