From: Aniket Patil <aniket112.patil@gmail.com>
To: 44346@debbugs.gnu.org
Cc: Aniket Patil <aniket112.patil@gmail.com>
Subject: [bug#44346] [PATCH 2/2] gnu: Add r-altmeta.
Date: Sat, 31 Oct 2020 20:38:51 +0530 [thread overview]
Message-ID: <20201031150851.210931-2-aniket112.patil@gmail.com> (raw)
In-Reply-To: <20201031150851.210931-1-aniket112.patil@gmail.com>
* gnu/packages/cran.scm (r-altmeta): New variable.
---
gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index cc4e5f2bba..b40c5bdb21 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24784,3 +24784,44 @@ multiple treatment studies, multiple endpoints, or other forms of clustering).
Network meta-analyses and meta-analyses accounting for known correlation
structures (e.g., due to phylogenetic relatedness) can also be conducted.")
(license license:gpl2+)))
+
+(define-public r-altmeta
+ (package
+ (name "r-altmeta")
+ (version "3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "altmeta" version))
+ (sha256
+ (base32
+ "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0"))))
+ (properties `((upstream-name . "altmeta")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-coda" ,r-coda)
+ ("r-lme4" ,r-lme4)
+ ("r-matrix" ,r-matrix)
+ ("r-metafor" ,r-metafor)
+ ("r-rjags" ,r-rjags)))
+ (home-page
+ "https://cran.r-project.org/web/packages/altmeta")
+ (synopsis "Alternative Meta-Analysis Methods")
+ (description
+ "This package provides alternative statistical methods for
+meta-analysis, including: - bivariate generalized linear mixed
+models for synthesizing odds ratios, relative risks, and risk
+differences (Chu et al., 2012 <doi:10.1177/0962280210393712>) -
+heterogeneity tests and measures that are robust to outliers
+(Lin et al., 2017 <doi:10.1111/biom.12543>); - measures, tests,
+and visualization tools for publication bias or small-study effects
+(Lin and Chu, 2018 <doi:10.1111/biom.12817>; Lin, 2019
+<doi:10.1002/jrsm.1340>; Lin, 2020 <doi:10.1177/0962280220910172>;
+Shi et al., 2020 <doi:10.1002/jrsm.1415>); - meta-analysis of diagnostic
+tests for synthesizing sensitivities, specificities, etc.
+(Reitsma et al., 2005 <doi:10.1016/j.jclinepi.2005.02.022>; Chu and Cole,
+2006 <doi:10.1016/j.jclinepi.2006.06.011>); - meta-analysis methods for
+synthesizing proportions (Lin and Chu, 2020
+<doi:10.1097/ede.0000000000001232>); - models for multivariate
+meta-analysis (Lin and Chu, 2018 <doi:10.1002/jrsm.1293>).")
+ (license license:gpl2+)))
--
2.28.0
next prev parent reply other threads:[~2020-10-31 15:12 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-10-31 15:08 [bug#44345] [PATCH 1/2] gnu: Add r-metafor Aniket Patil
2020-10-31 15:08 ` Aniket Patil [this message]
2020-12-22 18:28 ` zimoun
2020-12-22 20:46 ` Ricardo Wurmus
2020-12-22 22:32 ` bug#44345: " Ricardo Wurmus
2020-12-23 8:47 ` [bug#44345] " zimoun
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20201031150851.210931-2-aniket112.patil@gmail.com \
--to=aniket112.patil@gmail.com \
--cc=44346@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).