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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 14 Sep 2020 16:09:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43400 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43400@debbugs.gnu.org Cc: zimoun Received: via spool by 43400-submit@debbugs.gnu.org id=B43400.160009969232510 (code B ref 43400); Mon, 14 Sep 2020 16:09:05 +0000 Received: (at 43400) by debbugs.gnu.org; 14 Sep 2020 16:08:12 +0000 Received: from localhost ([127.0.0.1]:55986 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1X-0008SC-JR for submit@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:11 -0400 Received: from mail-wm1-f42.google.com ([209.85.128.42]:52675) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1R-0008Px-DB for 43400@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:05 -0400 Received: by mail-wm1-f42.google.com with SMTP id q9so577974wmj.2 for <43400@debbugs.gnu.org>; Mon, 14 Sep 2020 09:08:05 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=4qwhLrE7+oySAiwAMhiEwKlRjbB6BtbNSN2GlmLDJuA=; b=QEytrCz6zXIL4bPfxiTVbnNQ8kKYUoBWf3R3byzEJ+pR56AKF/cw6AW4ToSLoZuKH+ Go1Qb8W5/zRWcr5XQQ55Fp5FbS0Pb4OFoUgRbDVz+fiVeIo1vuIUPgdd/WcqDjbTOJbt X655bBykQIYJiepqOfpo0PmfkUiINEIflbUMorDT0VZLD58BnWY+JmJz93WanWaxi4EO edecajXMriUMMWvWf5i8OhzTITKgH+RUBlALsZkSAeAPKtEEZct6GirSYfTUv59UXgR9 AoSzr9wnYXXM9ZnFZYlEINdr5h1fdcnz/m87CPPeEnqdkJNbMV6jRmQz94wuS3+zj7G4 QTHA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=4qwhLrE7+oySAiwAMhiEwKlRjbB6BtbNSN2GlmLDJuA=; b=NcwhPrkmTDDjvg2SVrK1k+/7ZW0Qt2kukOmRjvh0wWSj9v2mVHp62ZGHneN6vDeQ9l AWGVNoo4DDAxFtfmBF9KY5mer8PIsNWSiTsXFG7VFoPa+5WM/Qw6W9qN1nAK74/QLpMd Tf3QSJQa+iEihq5L/c8au5X84W7fSsM0gGjnN+/fgeEmNJzNSVGJeySBqqQYDO9oKC7v gBuCGrPSFxL3v+tALSsBlMFgzHYF0DhmXmkCwyH4jARX8LsLA7QLndDWg92/Rsm/AA1h b43RIMA0zrO2Q18cYxYramkoUENfzgpzxMKiS4ji4jYZsMxbg/zCUGasHpkP2DY3fJ3/ Tonw== X-Gm-Message-State: AOAM533uR4Fzi+gVqQEEUbMIlLj3ReK5VfnShyU7cTtbCjnoo77G9ifx N1IZCCtueYmwlzNCp1lsFvn8423Zbjs= X-Google-Smtp-Source: ABdhPJylWfc/oCJAcsj4KWXr+DkA/3R1fs2jZe+7RrbYPZhfAVCxAyy9B4b6s5pJ6ImFTWv27sKjfA== X-Received: by 2002:a1c:4b0e:: with SMTP id y14mr114603wma.156.1600099679748; Mon, 14 Sep 2020 09:07:59 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s5sm22012851wrm.33.2020.09.14.09.07.59 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 14 Sep 2020 09:07:59 -0700 (PDT) From: zimoun Date: Mon, 14 Sep 2020 18:07:43 +0200 Message-Id: <20200914160747.8983-8-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com> References: <20200914160747.8983-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=QEytrCz6; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: iNXDWaMtyObb * gnu/packages/bioinformatics.scm (r-beachmat): Move from here... * gnu/packages/bioconductor.scm (r-beachmat): ...to here. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 25 ------------------------- 2 files changed, 25 insertions(+), 25 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d9f7a9fb67..0ecb460bc4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8336,6 +8336,31 @@ routines.") objects from the @code{graph} package.") (license license:epl1.0))) +(define-public r-beachmat + (package + (name "r-beachmat") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "beachmat" version)) + (sha256 + (base32 + "1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-delayedarray" ,r-delayedarray) + ("r-matrix" ,r-matrix))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/beachmat") + (synopsis "Compiling Bioconductor to handle each matrix type") + (description "This package provides a consistent C++ class interface for a +variety of commonly used matrix types, including sparse and HDF5-backed +matrices.") + (license license:gpl3))) + (define-public r-singlecellexperiment (package (name "r-singlecellexperiment") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ef6d6fc2d8..a84d19727c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10766,31 +10766,6 @@ block processing.") packages.") (license license:artistic2.0))) -(define-public r-beachmat - (package - (name "r-beachmat") - (version "2.4.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "beachmat" version)) - (sha256 - (base32 - "1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi")))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-delayedarray" ,r-delayedarray) - ("r-matrix" ,r-matrix))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/beachmat") - (synopsis "Compiling Bioconductor to handle each matrix type") - (description "This package provides a consistent C++ class interface for a -variety of commonly used matrix types, including sparse and HDF5-backed -matrices.") - (license license:gpl3))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.28.0