From: zimoun <zimon.toutoune@gmail.com>
To: 43400@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43400] [PATCH 06/12] gnu: r-scater: Move to (gnu packages bioconductor).
Date: Mon, 14 Sep 2020 18:07:41 +0200 [thread overview]
Message-ID: <20200914160747.8983-6-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 37 ---------------------------------
2 files changed, 37 insertions(+), 37 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 77de0e2275..52685a4df1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8336,6 +8336,43 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-scater
+ (package
+ (name "r-scater")
+ (version "1.16.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scater" version))
+ (sha256
+ (base32
+ "1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocneighbors" ,r-biocneighbors)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biocsingular" ,r-biocsingular)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-ggbeeswarm" ,r-ggbeeswarm)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rlang" ,r-rlang)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-viridis" ,r-viridis)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/davismcc/scater")
+ (synopsis "Single-cell analysis toolkit for gene expression data in R")
+ (description "This package provides a collection of tools for doing
+various analyses of single-cell RNA-seq gene expression data, with a focus on
+quality control.")
+ (license license:gpl2+)))
+
(define-public r-scran
(package
(name "r-scran")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dcafbb2d21..8dea6df8a1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10820,43 +10820,6 @@ factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
-(define-public r-scater
- (package
- (name "r-scater")
- (version "1.16.2")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "scater" version))
- (sha256
- (base32
- "1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-beachmat" ,r-beachmat)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocneighbors" ,r-biocneighbors)
- ("r-biocparallel" ,r-biocparallel)
- ("r-biocsingular" ,r-biocsingular)
- ("r-delayedarray" ,r-delayedarray)
- ("r-delayedmatrixstats" ,r-delayedmatrixstats)
- ("r-ggbeeswarm" ,r-ggbeeswarm)
- ("r-ggplot2" ,r-ggplot2)
- ("r-matrix" ,r-matrix)
- ("r-rcpp" ,r-rcpp)
- ("r-rlang" ,r-rlang)
- ("r-s4vectors" ,r-s4vectors)
- ("r-singlecellexperiment" ,r-singlecellexperiment)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-viridis" ,r-viridis)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/davismcc/scater")
- (synopsis "Single-cell analysis toolkit for gene expression data in R")
- (description "This package provides a collection of tools for doing
-various analyses of single-cell RNA-seq gene expression data, with a focus on
-quality control.")
- (license license:gpl2+)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.28.0
next prev parent reply other threads:[~2020-09-14 16:13 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-14 16:04 [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor) zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 05/12] gnu: r-scran: " zimoun
2020-09-14 16:07 ` zimoun [this message]
2020-09-14 16:07 ` [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 08/12] gnu: r-beachmat: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 11/12] gnu: r-hitc: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 12/12] gnu: r-fithic: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 10/12] gnu: r-hdf5array: " zimoun
2020-09-14 19:42 ` bug#43400: [PATCH 00/12] Move some BioConductor " Ricardo Wurmus
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