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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 14 Sep 2020 16:09:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43400 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43400@debbugs.gnu.org Cc: zimoun Received: via spool by 43400-submit@debbugs.gnu.org id=B43400.160009969032481 (code B ref 43400); Mon, 14 Sep 2020 16:09:03 +0000 Received: (at 43400) by debbugs.gnu.org; 14 Sep 2020 16:08:10 +0000 Received: from localhost ([127.0.0.1]:55978 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1W-0008Rj-0K for submit@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:10 -0400 Received: from mail-wr1-f52.google.com ([209.85.221.52]:45158) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1O-0008Po-21 for 43400@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:02 -0400 Received: by mail-wr1-f52.google.com with SMTP id x14so201288wrl.12 for <43400@debbugs.gnu.org>; Mon, 14 Sep 2020 09:08:02 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=NNeDv+bV3g6qLALFROO8O5RDlHRQWuGTwUQ9lkdK1YU=; b=N891d2iM2LgqQ2xppjdadBFGvJOGTc7IbTU8Kg3vF9YZVg03ERy3WNcrtz8BxliKeU xPV/sFjNWHdukBlEQDYCS+5IpmPZb/h7cKu3hFS1AZrf9xujcweau2fua7HrBr2FNBqS jDg6ZkWLIB72q8aNihAyc8E34oN3sjRd9uT9NsVgmlpQCCwNpOrtoONdDiKCDZF2EV7a W5lM+AyaEC2cESSddHd0ulQSfBTda8iCP4zAls3KqjGKoMpIyAGpdIbybUmCTkAP5BD3 3SRDo6MUArMVuIdllw3f/kDiGwp2XoH+JVlX2Fu+Swxln2+bm/MgzBe/qwuSZSuDiPZO poKg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=NNeDv+bV3g6qLALFROO8O5RDlHRQWuGTwUQ9lkdK1YU=; b=qDVdiIhkJyqC+G0HP+2YX6u8G5vpztENDHg3YDlBxl0qaFNXRzc22GLKAYIOL0DgiP fQhE1Gq6sb3dos7MYaExcHwWCeyVUwYeoUB8iXrKvmJZKRlQURzCXfIH2MFWgpwyCx+W JFTORBsOSIjcH/eMgfga2gv/XmKTm8ggsMgtCQmt0YePTYQ+VfofAkt0TMx5iXdmRs+t xbY17Yowl7vY3xxC9pnJ5KQeBe3Z1T+anqmQU5BEjgCIvXATsEPSxvCdA7jEN7pnfoRp 1GzrK3BluQso3ogEomp1R69M9YOBIFiNkdVnZwO93MtXOso+b4FrrrxrHp2lGpEkAE6w SQ9A== X-Gm-Message-State: AOAM531Pd+IS7vz/he5jwSnKLy/erex3yXWS9OnBxhA3nvMEIGaSZHTC qmRXiXCguhy0x/+5vckflaI0bhZNNbA= X-Google-Smtp-Source: ABdhPJzN9FTpffl3/jdQfWjpCkt9b5gXqXGyKwwtXj2yb1uxrcq87gHyQbkhYYJashxb23tLQ8NBGQ== X-Received: by 2002:a5d:4e0b:: with SMTP id p11mr16181657wrt.32.1600099676232; Mon, 14 Sep 2020 09:07:56 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s5sm22012851wrm.33.2020.09.14.09.07.55 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 14 Sep 2020 09:07:55 -0700 (PDT) From: zimoun Date: Mon, 14 Sep 2020 18:07:39 +0200 Message-Id: <20200914160747.8983-4-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com> References: <20200914160747.8983-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=N891d2iM; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: 5vx7Saj3EgHZ * gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here... * gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here. --- gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 36 --------------------------------- 2 files changed, 36 insertions(+), 36 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index dea0862b64..e81e9cd726 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8335,3 +8335,39 @@ routines.") "This package interfaces R with the graphviz library for plotting R graph objects from the @code{graph} package.") (license license:epl1.0))) + +(define-public r-delayedmatrixstats + (package + (name "r-delayedmatrixstats") + (version "1.10.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DelayedMatrixStats" version)) + (sha256 + (base32 + "046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx")))) + (properties + `((upstream-name . "DelayedMatrixStats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocparallel" ,r-biocparallel) + ("r-delayedarray" ,r-delayedarray) + ("r-hdf5array" ,r-hdf5array) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/PeteHaitch/DelayedMatrixStats") + (synopsis "Functions that apply to rows and columns of DelayedMatrix objects") + (description + "This package provides a port of the @code{matrixStats} API for use with +@code{DelayedMatrix} objects from the @code{DelayedArray} package. It +contains high-performing functions operating on rows and columns of +@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians}, +@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions +are optimized per data type and for subsetted calculations such that both +memory usage and processing time is minimized.") + (license license:expat))) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ffa2618458..ccdc693e08 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10900,42 +10900,6 @@ cell-specific biases, assignment of cell cycle phase, and detection of highly variable and significantly correlated genes.") (license license:gpl3))) -(define-public r-delayedmatrixstats - (package - (name "r-delayedmatrixstats") - (version "1.10.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "DelayedMatrixStats" version)) - (sha256 - (base32 - "046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx")))) - (properties - `((upstream-name . "DelayedMatrixStats"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocparallel" ,r-biocparallel) - ("r-delayedarray" ,r-delayedarray) - ("r-hdf5array" ,r-hdf5array) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-matrixstats" ,r-matrixstats) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://github.com/PeteHaitch/DelayedMatrixStats") - (synopsis "Functions that apply to rows and columns of DelayedMatrix objects") - (description - "This package provides a port of the @code{matrixStats} API for use with -@code{DelayedMatrix} objects from the @code{DelayedArray} package. It -contains high-performing functions operating on rows and columns of -@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians}, -@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions -are optimized per data type and for subsetted calculations such that both -memory usage and processing time is minimized.") - (license license:expat))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.28.0