From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id IFCUCpiWX19uKgAA0tVLHw (envelope-from ) for ; Mon, 14 Sep 2020 16:13:12 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id 8IbFBJiWX18zGAAAB5/wlQ (envelope-from ) for ; Mon, 14 Sep 2020 16:13:12 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id B1EC094060E for ; Mon, 14 Sep 2020 16:13:11 +0000 (UTC) Received: from localhost ([::1]:57016 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kHr6M-0000Zi-Iu for larch@yhetil.org; Mon, 14 Sep 2020 12:13:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:55186) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kHr2N-0004PP-Jc for guix-patches@gnu.org; Mon, 14 Sep 2020 12:09:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:44450) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kHr2N-0002eI-8N for guix-patches@gnu.org; Mon, 14 Sep 2020 12:09:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kHr2N-0008UA-3K for guix-patches@gnu.org; Mon, 14 Sep 2020 12:09:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 14 Sep 2020 16:09:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43400 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43400@debbugs.gnu.org Cc: zimoun Received: via spool by 43400-submit@debbugs.gnu.org id=B43400.160009968432432 (code B ref 43400); Mon, 14 Sep 2020 16:09:03 +0000 Received: (at 43400) by debbugs.gnu.org; 14 Sep 2020 16:08:04 +0000 Received: from localhost ([127.0.0.1]:55969 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1P-0008Qr-Ai for submit@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:03 -0400 Received: from mail-wm1-f51.google.com ([209.85.128.51]:55449) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1N-0008Pm-6I for 43400@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:01 -0400 Received: by mail-wm1-f51.google.com with SMTP id d4so557184wmd.5 for <43400@debbugs.gnu.org>; Mon, 14 Sep 2020 09:08:01 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=C8fm1RxcCX3R/MoquebhsUmZaVj8+soVwUL3uUmbwOg=; b=cOrTFWfgbr+viQu/r6gJ8T5ALngYGM6cpzOjTepldaxOvLna5x3wydrJw4i6/QbJk9 e+9fjaKZBapOUjY15ILxzf8THBC0u1HInHk25AG1NXJARLAPh6ZMHOWtcX2P5anL7nTG 0VY7zofkQDGxkN/O1VQpBI/J/RVbRh/9Zgq/pPhyqjW02BKQVj0mANqNME0TA/vJHZlI NzpBftCjIocRvCgCkNbcthTkzGHmibg3EWc5TAkb8yWb5WMGYHIymXoIsGdWS2LHlTMs QfmVC6Zyd39s2oI66AKdGb2HyXucVT4dsSYWt8junEdhixl84jxeEosMQBRW5CfWob4o GIUg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=C8fm1RxcCX3R/MoquebhsUmZaVj8+soVwUL3uUmbwOg=; b=A87Gvdtj3QnarBcvzhrF5RtCB+H2/OmBrG3yGenBykScBBIpnPxbCMFdE4NbpBX+aX NWV/2SgpryadA2rhmSnEpzjraK7NcQWEwyDAiyXdmkJvf1zkadNFCyK2ASheuVgQRobh RRDuNnAFWQSkZBLxg5d3wnJEXwxWMzsvbOu35PUqtiY/BDyWi+Zs7ibZl0xSy2Rfqnii AoxuU76PjldBrqHxKNZb6xRoR9A5yyN8dxXbFU8T6FiJsqK9ky9wAl4wcplEgRRjCuqW xLy4GsUy4Z1hL3aFWz4mRHHpHmG+tj7XCLpOyidiOkjxbn4D5QNXsWJSjUx1jUtiKNa+ zgeQ== X-Gm-Message-State: AOAM532RfuPfdntxeTx0PkGf46VM+Cht8RlYAapq7xl46CZSyrb5UjVR +Cq3sL2k2LxAuLrcna3AFHzEfQYYGlU= X-Google-Smtp-Source: ABdhPJypPV/O+QkzWTZ7RioGRoWt1k4r1k8lpcjcf/Ib4aBf4UE/SU+UmcKqhf53h23x/gB0Vkc8ZA== X-Received: by 2002:a1c:31c6:: with SMTP id x189mr97539wmx.83.1600099675416; Mon, 14 Sep 2020 09:07:55 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s5sm22012851wrm.33.2020.09.14.09.07.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 14 Sep 2020 09:07:54 -0700 (PDT) From: zimoun Date: Mon, 14 Sep 2020 18:07:38 +0200 Message-Id: <20200914160747.8983-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com> References: <20200914160747.8983-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=cOrTFWfg; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: 4SA0dMCmQawR * gnu/packages/graph.scm (r-rgraphviz): Move from here... * gnu/packages/bioconductor.scm (r-rgraphviz): ...to here. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/graph.scm | 28 ---------------------------- 2 files changed, 28 insertions(+), 28 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 57755e1116..dea0862b64 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8307,3 +8307,31 @@ generated.") "This package provides a library of core pre-processing and normalization routines.") (license license:lgpl2.0+))) + +(define-public r-rgraphviz + (package + (name "r-rgraphviz") + (version "2.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rgraphviz" version)) + (sha256 + (base32 + "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y")))) + (properties `((upstream-name . "Rgraphviz"))) + (build-system r-build-system) + ;; FIXME: Rgraphviz bundles the sources of an older variant of + ;; graphviz. It does not build with the latest version of graphviz, so + ;; we do not add graphviz to the inputs. + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-graph" ,r-graph))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://bioconductor.org/packages/Rgraphviz") + (synopsis "Plotting capabilities for R graph objects") + (description + "This package interfaces R with the graphviz library for plotting R graph +objects from the @code{graph} package.") + (license license:epl1.0))) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index a307fee808..db390fed5e 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -121,34 +121,6 @@ more.") (home-page "https://pypi.org/project/python-igraph/") (synopsis "Python bindings for the igraph network analysis library"))) -(define-public r-rgraphviz - (package - (name "r-rgraphviz") - (version "2.32.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "Rgraphviz" version)) - (sha256 - (base32 - "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y")))) - (properties `((upstream-name . "Rgraphviz"))) - (build-system r-build-system) - ;; FIXME: Rgraphviz bundles the sources of an older variant of - ;; graphviz. It does not build with the latest version of graphviz, so - ;; we do not add graphviz to the inputs. - (inputs `(("zlib" ,zlib))) - (propagated-inputs - `(("r-graph" ,r-graph))) - (native-inputs - `(("pkg-config" ,pkg-config))) - (home-page "https://bioconductor.org/packages/Rgraphviz") - (synopsis "Plotting capabilities for R graph objects") - (description - "This package interfaces R with the graphviz library for plotting R graph -objects from the @code{graph} package.") - (license license:epl1.0))) - (define-public r-rbiofabric (let ((commit "666c2ae8b0a537c006592d067fac6285f71890ac") (revision "1")) -- 2.28.0