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From: zimoun <zimon.toutoune@gmail.com>
To: 43400@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: Move to (gnu packages bioconductor).
Date: Mon, 14 Sep 2020 18:07:38 +0200	[thread overview]
Message-ID: <20200914160747.8983-3-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com>

* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.
---
 gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
 gnu/packages/graph.scm        | 28 ----------------------------
 2 files changed, 28 insertions(+), 28 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 57755e1116..dea0862b64 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8307,3 +8307,31 @@ generated.")
      "This package provides a library of core pre-processing and normalization
 routines.")
     (license license:lgpl2.0+)))
+
+(define-public r-rgraphviz
+  (package
+    (name "r-rgraphviz")
+    (version "2.32.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Rgraphviz" version))
+       (sha256
+        (base32
+         "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
+    (properties `((upstream-name . "Rgraphviz")))
+    (build-system r-build-system)
+    ;; FIXME: Rgraphviz bundles the sources of an older variant of
+    ;; graphviz.  It does not build with the latest version of graphviz, so
+    ;; we do not add graphviz to the inputs.
+    (inputs `(("zlib" ,zlib)))
+    (propagated-inputs
+     `(("r-graph" ,r-graph)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://bioconductor.org/packages/Rgraphviz")
+    (synopsis "Plotting capabilities for R graph objects")
+    (description
+     "This package interfaces R with the graphviz library for plotting R graph
+objects from the @code{graph} package.")
+    (license license:epl1.0)))
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index a307fee808..db390fed5e 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -121,34 +121,6 @@ more.")
     (home-page "https://pypi.org/project/python-igraph/")
     (synopsis "Python bindings for the igraph network analysis library")))
 
-(define-public r-rgraphviz
-  (package
-    (name "r-rgraphviz")
-    (version "2.32.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "Rgraphviz" version))
-       (sha256
-        (base32
-         "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
-    (properties `((upstream-name . "Rgraphviz")))
-    (build-system r-build-system)
-    ;; FIXME: Rgraphviz bundles the sources of an older variant of
-    ;; graphviz.  It does not build with the latest version of graphviz, so
-    ;; we do not add graphviz to the inputs.
-    (inputs `(("zlib" ,zlib)))
-    (propagated-inputs
-     `(("r-graph" ,r-graph)))
-    (native-inputs
-     `(("pkg-config" ,pkg-config)))
-    (home-page "https://bioconductor.org/packages/Rgraphviz")
-    (synopsis "Plotting capabilities for R graph objects")
-    (description
-     "This package interfaces R with the graphviz library for plotting R graph
-objects from the @code{graph} package.")
-    (license license:epl1.0)))
-
 (define-public r-rbiofabric
   (let ((commit "666c2ae8b0a537c006592d067fac6285f71890ac")
         (revision "1"))
-- 
2.28.0





  parent reply	other threads:[~2020-09-14 16:13 UTC|newest]

Thread overview: 14+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2020-09-14 16:04 [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor) zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: " zimoun
2020-09-14 16:07   ` zimoun [this message]
2020-09-14 16:07   ` [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 05/12] gnu: r-scran: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 06/12] gnu: r-scater: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 08/12] gnu: r-beachmat: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 11/12] gnu: r-hitc: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 12/12] gnu: r-fithic: " zimoun
2020-09-14 16:07   ` [bug#43400] [PATCH 10/12] gnu: r-hdf5array: " zimoun
2020-09-14 19:42 ` bug#43400: [PATCH 00/12] Move some BioConductor " Ricardo Wurmus

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