From: zimoun <zimon.toutoune@gmail.com>
To: 43400@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: Move to (gnu packages bioconductor).
Date: Mon, 14 Sep 2020 18:07:38 +0200 [thread overview]
Message-ID: <20200914160747.8983-3-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com>
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/graph.scm | 28 ----------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 57755e1116..dea0862b64 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8307,3 +8307,31 @@ generated.")
"This package provides a library of core pre-processing and normalization
routines.")
(license license:lgpl2.0+)))
+
+(define-public r-rgraphviz
+ (package
+ (name "r-rgraphviz")
+ (version "2.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rgraphviz" version))
+ (sha256
+ (base32
+ "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
+ (properties `((upstream-name . "Rgraphviz")))
+ (build-system r-build-system)
+ ;; FIXME: Rgraphviz bundles the sources of an older variant of
+ ;; graphviz. It does not build with the latest version of graphviz, so
+ ;; we do not add graphviz to the inputs.
+ (inputs `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-graph" ,r-graph)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (home-page "https://bioconductor.org/packages/Rgraphviz")
+ (synopsis "Plotting capabilities for R graph objects")
+ (description
+ "This package interfaces R with the graphviz library for plotting R graph
+objects from the @code{graph} package.")
+ (license license:epl1.0)))
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index a307fee808..db390fed5e 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -121,34 +121,6 @@ more.")
(home-page "https://pypi.org/project/python-igraph/")
(synopsis "Python bindings for the igraph network analysis library")))
-(define-public r-rgraphviz
- (package
- (name "r-rgraphviz")
- (version "2.32.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "Rgraphviz" version))
- (sha256
- (base32
- "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
- (properties `((upstream-name . "Rgraphviz")))
- (build-system r-build-system)
- ;; FIXME: Rgraphviz bundles the sources of an older variant of
- ;; graphviz. It does not build with the latest version of graphviz, so
- ;; we do not add graphviz to the inputs.
- (inputs `(("zlib" ,zlib)))
- (propagated-inputs
- `(("r-graph" ,r-graph)))
- (native-inputs
- `(("pkg-config" ,pkg-config)))
- (home-page "https://bioconductor.org/packages/Rgraphviz")
- (synopsis "Plotting capabilities for R graph objects")
- (description
- "This package interfaces R with the graphviz library for plotting R graph
-objects from the @code{graph} package.")
- (license license:epl1.0)))
-
(define-public r-rbiofabric
(let ((commit "666c2ae8b0a537c006592d067fac6285f71890ac")
(revision "1"))
--
2.28.0
next prev parent reply other threads:[~2020-09-14 16:13 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-14 16:04 [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor) zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: " zimoun
2020-09-14 16:07 ` zimoun [this message]
2020-09-14 16:07 ` [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 05/12] gnu: r-scran: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 06/12] gnu: r-scater: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 08/12] gnu: r-beachmat: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 11/12] gnu: r-hitc: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 12/12] gnu: r-fithic: " zimoun
2020-09-14 16:07 ` [bug#43400] [PATCH 10/12] gnu: r-hdf5array: " zimoun
2020-09-14 19:42 ` bug#43400: [PATCH 00/12] Move some BioConductor " Ricardo Wurmus
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