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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 14 Sep 2020 16:09:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43400 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43400@debbugs.gnu.org Cc: zimoun Received: via spool by 43400-submit@debbugs.gnu.org id=B43400.160009969332535 (code B ref 43400); Mon, 14 Sep 2020 16:09:06 +0000 Received: (at 43400) by debbugs.gnu.org; 14 Sep 2020 16:08:13 +0000 Received: from localhost ([127.0.0.1]:55992 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1Z-0008Sb-BJ for submit@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:13 -0400 Received: from mail-wm1-f65.google.com ([209.85.128.65]:50234) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1U-0008Qp-Eq for 43400@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:08 -0400 Received: by mail-wm1-f65.google.com with SMTP id e17so591169wme.0 for <43400@debbugs.gnu.org>; Mon, 14 Sep 2020 09:08:08 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=RUmD3Qbk2Qu7nZdCvedNLapmlrQ62L+fb463AHm6F1c=; b=QYiQK7moPEoEe0dSOkGzUByeQ5mdwV7RBFXb768DWjkj6vn0jZSFLtorxpFlya6oRJ 7ZoRHL9+UjVAbhum1uVK2CIAZxcHJIdU/5GBYMnGh/a5MJGbozp9W94MYTvQsn5L8HKl zj5GtEyo+v9xOjYe18lfYT6ltz60UzQ1e1bFscA4ffcX2L/Gla6XxsYIbMUmov+clI3w flCTkrHydGuXrLBryRPOE6BMhFkhXmaO+xim0plrAZ9Z9eVDuCTYFtNp7g2u3aMb38x0 v0TnKJzfEUL9TQ4Tu317CCD92E/YzdQIBUpbV9TPTuJo+DCqiTwIta8v+ql/PKxf0Ebc YDlw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=RUmD3Qbk2Qu7nZdCvedNLapmlrQ62L+fb463AHm6F1c=; b=OTlw+a40DMjdQdYn5LZKVPgfMhfkDl30533O+DGuGpZEfamav4AvJmg68FLr0o9q6d 0i8zGvvDTfwuRJcSRxW63MRywuMj6aZDPcUGM0NS8Ta2xp4ZDQDY+o7Y9D3LUlbVs++b kxCLd859LptY6o4fGU8LXaRtk+rd53ODScOIIYCdHXoJaxI3dMJnlGo5wtwojGO9MqhH t5IWL72id3CyAagd2GLK/6D0T1sn8HO207dp0FFYyHB17QFI9MoZwU6Lj7pwpWaLlXg9 zRPM0ChEfRL+9Pdl/ihSEj9qATZQ6mPXbLwg/pkfo+C8QQ+ryR8w9ae/xjgwuJz+cVfb P1wg== X-Gm-Message-State: AOAM533x5OZIxfRYEKu9su1f2PdB3IZ3uCHZa8xqsvV6ySDynsmOtvt2 XKTrqjAUkyn/cykKCfGGV673n4As8fU= X-Google-Smtp-Source: ABdhPJwKh1krrrGDSE3xR3WL+MFsZ28dpzQ4JJ1zmK8aL6O41fPTkeOvUIydCE8H0VSXZCjKImkzCg== X-Received: by 2002:a7b:cd89:: with SMTP id y9mr134390wmj.72.1600099682653; Mon, 14 Sep 2020 09:08:02 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s5sm22012851wrm.33.2020.09.14.09.08.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 14 Sep 2020 09:08:02 -0700 (PDT) From: zimoun Date: Mon, 14 Sep 2020 18:07:47 +0200 Message-Id: <20200914160747.8983-12-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com> References: <20200914160747.8983-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=QYiQK7mo; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: PaluB1rkGCaG * gnu/packages/bioinformatics.scm (r-hdf5array): Move from here... * gnu/packages/bioconductor.scm (r-hdf5array): ...to here. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 30 ------------------------------ 2 files changed, 30 insertions(+), 30 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0e63c486ee..b6a09c4ce4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8337,6 +8337,36 @@ routines.") objects from the @code{graph} package.") (license license:epl1.0))) +(define-public r-hdf5array + (package + (name "r-hdf5array") + (version "1.16.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "HDF5Array" version)) + (sha256 + (base32 + "01767v90nl0499jcicpxngbbs0af5p9c5aasi5va01w3v5bnqddn")))) + (properties `((upstream-name . "HDF5Array"))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-delayedarray" ,r-delayedarray) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-rhdf5" ,r-rhdf5) + ("r-rhdf5lib" ,r-rhdf5lib) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/HDF5Array") + (synopsis "HDF5 back end for DelayedArray objects") + (description "This package provides an array-like container for convenient +access and manipulation of HDF5 datasets. It supports delayed operations and +block processing.") + (license license:artistic2.0))) + (define-public r-rhdf5lib (package (name "r-rhdf5lib") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8bd42c9429..d874fe9a13 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10654,36 +10654,6 @@ quality controls, normalization, visualization, and further analysis are also provided.") (license license:artistic2.0))) -(define-public r-hdf5array - (package - (name "r-hdf5array") - (version "1.16.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "HDF5Array" version)) - (sha256 - (base32 - "01767v90nl0499jcicpxngbbs0af5p9c5aasi5va01w3v5bnqddn")))) - (properties `((upstream-name . "HDF5Array"))) - (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-delayedarray" ,r-delayedarray) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-rhdf5" ,r-rhdf5) - ("r-rhdf5lib" ,r-rhdf5lib) - ("r-s4vectors" ,r-s4vectors))) - (home-page "https://bioconductor.org/packages/HDF5Array") - (synopsis "HDF5 back end for DelayedArray objects") - (description "This package provides an array-like container for convenient -access and manipulation of HDF5 datasets. It supports delayed operations and -block processing.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.28.0