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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 14 Sep 2020 16:09:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43400 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43400@debbugs.gnu.org Cc: zimoun Received: via spool by 43400-submit@debbugs.gnu.org id=B43400.160009969332528 (code B ref 43400); Mon, 14 Sep 2020 16:09:05 +0000 Received: (at 43400) by debbugs.gnu.org; 14 Sep 2020 16:08:13 +0000 Received: from localhost ([127.0.0.1]:55990 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1Y-0008SU-Ur for submit@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:13 -0400 Received: from mail-wm1-f66.google.com ([209.85.128.66]:53361) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kHr1T-0008QX-Mu for 43400@debbugs.gnu.org; Mon, 14 Sep 2020 12:08:08 -0400 Received: by mail-wm1-f66.google.com with SMTP id x23so575020wmi.3 for <43400@debbugs.gnu.org>; Mon, 14 Sep 2020 09:08:07 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=b2OYHRwW703vxSoHixOMwkUvsf6nu3+9eIZ5a4JWVLQ=; b=TX2jFvH7oOwsmAstyJ7DJnI2VjhvP5Gitan4/Ak0p2fYOodgjGZu8kv4IykO7z0JIJ /i1GSCUjFu+RQfPP/TtnTRzvzsjTqYv9DbBmKxVqlAY0x/9N/ivaNLeXejwMjtIAwhtn /nASSab0YT4NNWUQLv/ucidzFUPRaQKppO7u/8sZb5GzTlcDYI6puIgXJU+2n5ChUpF+ XCgZVnt5gsQKDSxVar+7Fk4CQg/ngsuv+d9Y8ZTaZKpRbLp9uMzFuNGbFBMaohpI8F8H kIq+KHGklJwFSKKcgPApaTqhkNJvmUhb3kmwJQV2/XXUJxgc6y+XZ7/uTdlP8YvT80oE iiyw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=b2OYHRwW703vxSoHixOMwkUvsf6nu3+9eIZ5a4JWVLQ=; b=W02XhQshtbMNr1dTC4LzXGdXSBjK+lx4o83wR+UIfnkig05GFg8Z7Al3dgEPEOiaD/ yxsN81kD1OW983afyjuEmvM0AXRK/TjdrrDJHefKudIm2wSyj0FKJbemVzZrdqvb2K1y G/ncthhhC4Dmq0H9651ZG5XbrcXPpLAdiAyvinHKUPyX3HejmEY1HNVvGvScyxyZOYbd 8R8HIZQRz54Cnp/sOn9SBMhw07JkTkwyH0nxw+7ZcYkPozlB1BGgminyOYjZ2+kn1fWm 4x6Q+E3VpwryNeEbCCp/iH+3WOmRfUN5d4y5Psir4sONsZrz3qtr/CYba2VzGk96vnG7 2pHA== X-Gm-Message-State: AOAM5331xU8kVVkzkiVvVMG4xjhcyDPCuF/paB0N6OXJc4S8qnrzk+uG lVMNHeYhDS9OAjKV3zu0scLkoa2jnUo= X-Google-Smtp-Source: ABdhPJzrpwjCFlMQFen0UwEGsJMAm7jGnIZsZGffOBkKHCjXpxCQs/n2Eqg9+XpwCWi5keHguEQcng== X-Received: by 2002:a05:600c:230c:: with SMTP id 12mr103005wmo.23.1600099681860; Mon, 14 Sep 2020 09:08:01 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s5sm22012851wrm.33.2020.09.14.09.08.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 14 Sep 2020 09:08:01 -0700 (PDT) From: zimoun Date: Mon, 14 Sep 2020 18:07:46 +0200 Message-Id: <20200914160747.8983-11-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200914160747.8983-1-zimon.toutoune@gmail.com> References: <20200914160747.8983-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=TX2jFvH7; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: Boo75O7/L8A9 * gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5878c43a3d..9473f3a286 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8337,6 +8337,32 @@ routines.") objects from the @code{graph} package.") (license license:epl1.0))) +(define-public r-fithic + (package + (name "r-fithic") + (version "1.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "FitHiC" version)) + (sha256 + (base32 + "1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp")))) + (properties `((upstream-name . "FitHiC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-fdrtool" ,r-fdrtool) + ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/FitHiC") + (synopsis "Confidence estimation for intra-chromosomal contact maps") + (description + "Fit-Hi-C is a tool for assigning statistical confidence estimates to +intra-chromosomal contact maps produced by genome-wide genome architecture +assays such as Hi-C.") + (license license:gpl2+))) + (define-public r-hitc (package (name "r-hitc") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6bbcc3fe00..71369affaf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10599,32 +10599,6 @@ EMBL-EBI GWAS catalog.") visualizations for publication-quality multi-panel figures.") (license license:gpl2+))) -(define-public r-fithic - (package - (name "r-fithic") - (version "1.14.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "FitHiC" version)) - (sha256 - (base32 - "1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp")))) - (properties `((upstream-name . "FitHiC"))) - (build-system r-build-system) - (propagated-inputs - `(("r-data-table" ,r-data-table) - ("r-fdrtool" ,r-fdrtool) - ("r-rcpp" ,r-rcpp))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/FitHiC") - (synopsis "Confidence estimation for intra-chromosomal contact maps") - (description - "Fit-Hi-C is a tool for assigning statistical confidence estimates to -intra-chromosomal contact maps produced by genome-wide genome architecture -assays such as Hi-C.") - (license license:gpl2+))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.28.0