From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id oNqSJBy+W19mLQAA0tVLHw (envelope-from ) for ; Fri, 11 Sep 2020 18:12:44 +0000 Received: from aspmx2.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id eYIWHxy+W1+EQAAA1q6Kng (envelope-from ) for ; Fri, 11 Sep 2020 18:12:44 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx2.migadu.com (Postfix) with ESMTPS id EC0486800E1 for ; Fri, 11 Sep 2020 18:12:43 +0000 (UTC) Received: from localhost ([::1]:54124 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kGnXO-0001Bd-Pl for larch@yhetil.org; Fri, 11 Sep 2020 14:12:42 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:54264) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kGnUr-0005Lr-8k for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:05 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:33877) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kGnUq-00068e-UF for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kGnUq-0005OJ-Pu for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#43345] [PATCH 06/12] gnu: r-qtl2: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 11 Sep 2020 18:10:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43345 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43345@debbugs.gnu.org Cc: zimoun Received: via spool by 43345-submit@debbugs.gnu.org id=B43345.159984775420577 (code B ref 43345); Fri, 11 Sep 2020 18:10:04 +0000 Received: (at 43345) by debbugs.gnu.org; 11 Sep 2020 18:09:14 +0000 Received: from localhost ([127.0.0.1]:45406 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnU1-0005Lj-6L for submit@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:13 -0400 Received: from mail-wr1-f54.google.com ([209.85.221.54]:37607) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnTs-0005JY-2O for 43345@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:05 -0400 Received: by mail-wr1-f54.google.com with SMTP id z4so12364316wrr.4 for <43345@debbugs.gnu.org>; Fri, 11 Sep 2020 11:09:04 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=MXgiRsuZ4Kv5JG0yLAbEKP3yDkO4L4RVg+O5VcwvTJ0=; b=YWj1RrK51gCvuddAvJQ6I/JGtyUEVghvCv3KzHJnbusxa9nEG0M9TeEkeuG2w2tEQP 2o1qc4Bk+27p2HedX3AAPx8kjVEghSOCwSDCIjlxDOClSEy9zDgB+IW9AiFmrwAy6oRa q0Pt4FK7swL1Z5ZyjKS9tFcGudvP94Ic6utgDYgU/EmG+1IM+/MSNPGifo5wadeMeOK2 lPSRpg1PROD0ONRExvn91jkHXlcHzsPZDG1wcdvRUd0eNYzNq4xxUnEFiqCeOEhAfWY4 y+1ZhumnInw7OEapg2eUUly/5CKyTl9NhWJY8CX/Iw21g1W7aLYfFLnHCjMVeoacmcdz mvxw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=MXgiRsuZ4Kv5JG0yLAbEKP3yDkO4L4RVg+O5VcwvTJ0=; b=Ewz/83vsVKSNnwNPSPSCmE+wdsN1ppkfcsCCuNxGL9Yn+Snmlsv9/I3n91CtKJLHvJ o6CbeDlxFr0lW7iuN6hRoEqbAvfjeyTsig/wBwv3QVezRtbQbkOUwXl4pM8TZzTXM19M equBvXtkOpusJTtCgqcllhbmQCtJZAC6nLwj+oBPRh+O/T1LYU+NedWx4ak5J5CmLDH/ fcgugx8BHa+aFC1lt42KgOby2d540l7lZVyeCb6m05daEeTBajsliys8Zw8YfU3tRnFy mn5NprQ3jlhCe0H5SxkLH27ZHkMAuv/Bo4tCddFH3TvMt5KBMaz65dJgifDYukgrnqqW U7KA== X-Gm-Message-State: AOAM531Xue/vEXKwIPMJPfWxTBmnCsZRfEmVoNF8eRvTBrmx35e/f5SV wtS0DsVhbbI6nfiDPy4VGd43deEqobo= X-Google-Smtp-Source: ABdhPJyoZ7eT5kZNIiykw/KiJUX6rHGJ4y+p552AeiKzXTEFDKq3eRytzLWPopLieyxlHzzM9WoSmQ== X-Received: by 2002:adf:f544:: with SMTP id j4mr3165103wrp.74.1599847738264; Fri, 11 Sep 2020 11:08:58 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id y1sm5914005wmd.22.2020.09.11.11.08.57 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 11 Sep 2020 11:08:57 -0700 (PDT) From: zimoun Date: Fri, 11 Sep 2020 20:08:43 +0200 Message-Id: <20200911180849.12582-6-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com> References: <20200911180849.12582-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx2.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=YWj1RrK5; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 0.09 X-TUID: yGwasm5sFN90 * gnu/packages/bioinformatics.scm (r-qtl2): Move from here ... * gnu/packages/cran.scm (r-qtl2): ... to here. --- gnu/packages/bioinformatics.scm | 26 -------------------------- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 2 files changed, 27 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ae728f09dc..4de52f3aaa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8510,32 +8510,6 @@ Stephens (1990).") throughput genetic sequencing data sets using regression methods.") (license license:artistic2.0))) -(define-public r-qtl2 - (package - (name "r-qtl2") - (version "0.22-11") - (source (origin - (method url-fetch) - (uri (cran-uri "qtl2" version)) - (sha256 - (base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr")))) - (build-system r-build-system) - (propagated-inputs - `(("r-data-table" ,r-data-table) - ("r-jsonlite" ,r-jsonlite) - ("r-rcpp" ,r-rcpp) - ("r-rcppeigen" ,r-rcppeigen) - ("r-rsqlite" ,r-rsqlite) - ("r-yaml" ,r-yaml))) - (home-page "https://kbroman.org/qtl2/") - (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses") - (description - "This package provides a set of tools to perform @dfn{Quantitative Trait -Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the -@code{R/qtl} package to better handle high-dimensional data and complex cross -designs. Broman et al. (2018) .") - (license license:gpl3))) - (define-public r-zlibbioc (package (name "r-zlibbioc") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 868f660e41..bd36e1bacb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19,6 +19,7 @@ ;;; Copyright © 2019 Nicolò Balzarotti ;;; Copyright © 2019 Wiktor Żelazny ;;; Copyright © 2019 Arne Babenhauserheide +;;; Copyright © 2019, 2020 Efraim Flashner ;;; Copyright © 2020 Todor Kondić ;;; Copyright © 2020 Danjela Lura ;;; Copyright © 2020 Naga Malleswari @@ -23727,3 +23728,29 @@ Using a hidden Markov model, R/qtl estimates genetic maps, to identify genotyping errors, and to perform single-QTL and two-QTL, two-dimensional genome scans.") (license license:gpl3))) + +(define-public r-qtl2 + (package + (name "r-qtl2") + (version "0.22-11") + (source (origin + (method url-fetch) + (uri (cran-uri "qtl2" version)) + (sha256 + (base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rsqlite" ,r-rsqlite) + ("r-yaml" ,r-yaml))) + (home-page "https://kbroman.org/qtl2/") + (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses") + (description + "This package provides a set of tools to perform @dfn{Quantitative Trait +Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the +@code{R/qtl} package to better handle high-dimensional data and complex cross +designs. Broman et al. (2018) .") + (license license:gpl3))) -- 2.28.0