From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id yI01Bjy/W19bMQAA0tVLHw (envelope-from ) for ; Fri, 11 Sep 2020 18:17:32 +0000 Received: from aspmx2.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id mA+ZADy/W19EfQAAB5/wlQ (envelope-from ) for ; Fri, 11 Sep 2020 18:17:32 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx2.migadu.com (Postfix) with ESMTPS id 5718E6800E1 for ; Fri, 11 Sep 2020 18:17:31 +0000 (UTC) Received: from localhost ([::1]:36124 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kGnc2-0005W4-7z for larch@yhetil.org; Fri, 11 Sep 2020 14:17:30 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:54284) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kGnUt-0005PV-A9 for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:07 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:33882) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kGnUs-000695-W9 for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:07 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kGnUs-0005Ow-SB for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:06 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#43345] [PATCH 12/12] gnu: r-absfiltergsea: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 11 Sep 2020 18:10:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43345 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43345@debbugs.gnu.org Cc: zimoun Received: via spool by 43345-submit@debbugs.gnu.org id=B43345.159984776720628 (code B ref 43345); Fri, 11 Sep 2020 18:10:06 +0000 Received: (at 43345) by debbugs.gnu.org; 11 Sep 2020 18:09:27 +0000 Received: from localhost ([127.0.0.1]:45416 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnUE-0005MY-Pa for submit@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:27 -0400 Received: from mail-wm1-f47.google.com ([209.85.128.47]:53850) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnTw-0005K6-BE for 43345@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:08 -0400 Received: by mail-wm1-f47.google.com with SMTP id x23so5221965wmi.3 for <43345@debbugs.gnu.org>; Fri, 11 Sep 2020 11:09:08 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=w0jLfxxEecygBKLlRE/6Jn91apWqdVoaDLdI/yYTiRM=; b=YoLk7hbo3c22VHUE2AZ9IzE2/nNkWewVH/ZXUVweIECuVLc7CspU5uHgJXiETZW+dJ 0VB8Ewl7VnyTUMDDRrsRoA4bMvVLPuJQdobufsPYETj11h3pGzcPxo4S1XsXY6O8l17q /MO+nV1lMVLFZcxxvb/5061/rH+YCrBW/f7Ovr/Rzo51o1GAjE8c1dGMvVSb+ZytK2/I c3Jcd1HobzkmRodS2R9Q2BTGinPOXzslkmdOW7/Dl55hgWhYwbftV0NHevZN1JiJS92m Oyki6l7rq77UkdVrUyNQXlX0AVK2daIB8BaKL4FbbngN1MMLB1gB2N07NwsEGSO+MyEe 9WYg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=w0jLfxxEecygBKLlRE/6Jn91apWqdVoaDLdI/yYTiRM=; b=GFvsO5t50eue8kcwMkseGP+6luGTwAM3bD+fbLjMEd7/zhWtJW5gODrTS/IpXDLCZN WlgJUhOnDaln+ANB5uuBDwqh1F4sQSGJ4OTgjSi4FwtP2P37SficF48OWoBE4ti34yR7 Dr3LKEZSxc1MdfPZ8tPcPKzqolIy/xR3Krk3mT4OaLmpBl+mN3YU5McPihTIAVKCdT5r 4qhFWPcYrursuHpqALkYqfj8rmnZYMT3kYtnxClCOgxCW4DnHH89QPPCpJn+3gaAk5px brThiJcAs/FkyMkAxZVAhD4flpgFs8MGV8QgYzNGq0DgettFxeH2AGJW4AjXFGhuCqBz 2e7A== X-Gm-Message-State: AOAM530JZN34qk/L3VKGuQ72VdRCNDkVAqtIDXREBV/1FBzR8nMQyYZj KKPElDWrDSNIZ5NQNvJc9TxOpOZ0Dm8= X-Google-Smtp-Source: ABdhPJx1E6+vfxstnrmhjSmul6xOqcmlEw10hH9GwNdA32QPyjoKw86/9NJ18IO53bCh0Xoo1ORDwA== X-Received: by 2002:a1c:234d:: with SMTP id j74mr3221054wmj.157.1599847742640; Fri, 11 Sep 2020 11:09:02 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id y1sm5914005wmd.22.2020.09.11.11.09.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 11 Sep 2020 11:09:02 -0700 (PDT) From: zimoun Date: Fri, 11 Sep 2020 20:08:48 +0200 Message-Id: <20200911180849.12582-11-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com> References: <20200911180849.12582-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx2.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=YoLk7hbo; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: iOIwASxRqabJ * gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here ... * gnu/packages/cran.scm (r-absfiltergsea): ... to here. --- gnu/packages/bioinformatics.scm | 27 --------------------------- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6381523009..ffa2618458 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14083,33 +14083,6 @@ downstream analysis. Poretools operates directly on the native FAST5, a variant of the Hierarchical Data Format (HDF5) standard.") (license license:expat)))) -(define-public r-absfiltergsea - (package - (name "r-absfiltergsea") - (version "1.5.1") - (source - (origin - (method url-fetch) - (uri (cran-uri "AbsFilterGSEA" version)) - (sha256 - (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) - (properties `((upstream-name . "AbsFilterGSEA"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-deseq" ,r-deseq) - ("r-limma" ,r-limma) - ("r-rcpp" ,r-rcpp) - ("r-rcpparmadillo" ,r-rcpparmadillo))) - (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") - (synopsis "Improved false positive control of gene-permuting with absolute filtering") - (description - "This package provides a function that performs gene-permuting of a gene-set -enrichment analysis (GSEA) calculation with or without the absolute filtering. - Without filtering, users can perform (original) two-tailed or one-tailed -absolute GSEA.") - (license license:gpl2))) - (define-public jamm (package (name "jamm") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5b65d2a372..f9b6930f70 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23926,3 +23926,30 @@ Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods include Markov models of discrete and continuous trait evolution and constant rate speciation and extinction.") (license license:gpl2+))) + +(define-public r-absfiltergsea + (package + (name "r-absfiltergsea") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbsFilterGSEA" version)) + (sha256 + (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) + (properties `((upstream-name . "AbsFilterGSEA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-deseq" ,r-deseq) + ("r-limma" ,r-limma) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") + (synopsis "Improved false positive control of gene-permuting with absolute filtering") + (description + "This package provides a function that performs gene-permuting of a gene-set +enrichment analysis (GSEA) calculation with or without the absolute filtering. + Without filtering, users can perform (original) two-tailed or one-tailed +absolute GSEA.") + (license license:gpl2))) -- 2.28.0