From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 2BvULC2/W1/0OQAA0tVLHw (envelope-from ) for ; Fri, 11 Sep 2020 18:17:17 +0000 Received: from aspmx2.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id SAYNJy2/W19pQgAA1q6Kng (envelope-from ) for ; Fri, 11 Sep 2020 18:17:17 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx2.migadu.com (Postfix) with ESMTPS id 336CD6800E1 for ; Fri, 11 Sep 2020 18:17:17 +0000 (UTC) Received: from localhost ([::1]:35696 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kGnbo-0005KE-1h for larch@yhetil.org; Fri, 11 Sep 2020 14:17:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:54274) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kGnUs-0005OM-UK for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:33880) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kGnUs-00068y-Jj for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kGnUs-0005On-Es for guix-patches@gnu.org; Fri, 11 Sep 2020 14:10:06 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#43345] [PATCH 11/12] gnu: r-diversitree: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 11 Sep 2020 18:10:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43345 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43345@debbugs.gnu.org Cc: zimoun Received: via spool by 43345-submit@debbugs.gnu.org id=B43345.159984776620621 (code B ref 43345); Fri, 11 Sep 2020 18:10:06 +0000 Received: (at 43345) by debbugs.gnu.org; 11 Sep 2020 18:09:26 +0000 Received: from localhost ([127.0.0.1]:45414 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnU7-0005MJ-Fk for submit@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:26 -0400 Received: from mail-wm1-f45.google.com ([209.85.128.45]:51832) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnTv-0005Jx-Mh for 43345@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:08 -0400 Received: by mail-wm1-f45.google.com with SMTP id w2so5235396wmi.1 for <43345@debbugs.gnu.org>; Fri, 11 Sep 2020 11:09:07 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=myTA6XDAbwO4dhKubKklFR2eVl5732RTcYijk9fm4ls=; b=lAx/qNK1FJpWQoiRkXVGqfj1AhPCDY47toTFq9QQM+EDJXd8NJN58mveJbUPBUHWzL HEe4NmKrV05jgFhCzDGwBVGATzfSVfzSZtsR9V5eppFy0f9bxBIncnLgejiYHfgRpBXl t/JD/vv+VyAL86TBtL4/KXNLI0Xbn7GysAH/C2jy8JM4pec8rrmEYLLIMz5rGhlDBPHj IHq5K85DX25k/9YXH8i1ml6O6bnn3XJFzbcDgrzEnso3VPl4Ov0G1tkV0TuVvmmKWhpC UbLXiDXK0rzadC9m+sjI/UMizyOzMkA81Z1RUg+4RqH3fazjgXyo5WvCbQbgAAm1N6R6 j16Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=myTA6XDAbwO4dhKubKklFR2eVl5732RTcYijk9fm4ls=; b=F3tSk74ss1jZytxJcQG0BBgCJpD50VGXWr6zFYHQ5nDEbNizginqsUVSxkPrM3uEGr irj9UQuh3NUKsVundEl2DEqy+a9vNaTGUtwe4qW2UFLFKBr2qMhEmwrWIioqgd9ccCch AfmHY2PmKlIksyD6jzbqNmasNsFoPoE6BI/z39+um9iLC2PI9sQv04R120tdcd7khm3w xtI9TQaeK3AF/0cSMKShtYeoD9t3e1sMiHzNkjBSXYYqvVwl4fS8qY27P3o0Mx/gJG/r WAcPJ2IkYtkkPJ9fcitQHf1Bx2JNx4LoMf6fyWFUjBy0vIKzqKlMtJ7n1sbNxTJhwdot KHAA== X-Gm-Message-State: AOAM533JdvLwdXUGYdkMviIPzquWZLkyKM5N+NU6khwN7A3vO9hRKCis jB8AC2ZAZbrmKJqw7qb8Uzb8hFUtEPU= X-Google-Smtp-Source: ABdhPJyirKw03ChJvgpZogjHOcnCdJeucXxyQwV4+xOkR8z4QPHjd69wnfqA4NVXHZuEilm89Z2uog== X-Received: by 2002:a1c:4d14:: with SMTP id o20mr3286342wmh.14.1599847741857; Fri, 11 Sep 2020 11:09:01 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id y1sm5914005wmd.22.2020.09.11.11.09.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 11 Sep 2020 11:09:01 -0700 (PDT) From: zimoun Date: Fri, 11 Sep 2020 20:08:47 +0200 Message-Id: <20200911180849.12582-10-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com> References: <20200911180849.12582-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx2.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=lAx/qNK1; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: KYX290ZYoxQ3 * gnu/packages/bioinformatics.scm (r-diversitree): Move from here ... * gnu/packages/cran.scm (r-diversitree): ... to here. --- gnu/packages/bioinformatics.scm | 31 ------------------------------- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 2 files changed, 31 insertions(+), 31 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bec6c1dc4a..6381523009 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13084,37 +13084,6 @@ analyses in addition to large-scale sequence-level searches.") (supported-systems '("x86_64-linux")) (license license:bsd-3)))) -(define-public r-diversitree - (package - (name "r-diversitree") - (version "0.9-13") - (source - (origin - (method url-fetch) - (uri (cran-uri "diversitree" version)) - (sha256 - (base32 - "00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix")))) - (build-system r-build-system) - (native-inputs - `(("gfortran" ,gfortran))) - (inputs `(("fftw" ,fftw) ("gsl" ,gsl))) - (propagated-inputs - `(("r-ape" ,r-ape) - ("r-desolve" ,r-desolve) - ("r-rcpp" ,r-rcpp) - ("r-subplex" ,r-subplex))) - (home-page "https://www.zoology.ubc.ca/prog/diversitree") - (synopsis "Comparative 'phylogenetic' analyses of diversification") - (description "This package contains a number of comparative \"phylogenetic\" -methods, mostly focusing on analysing diversification and character evolution. -Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction) -and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and -Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods -include Markov models of discrete and continuous trait evolution and constant -rate speciation and extinction.") - (license license:gpl2+))) - (define-public sjcount ;; There is no tag for version 3.2, nor is there a release archive. (let ((commit "292d3917cadb3f6834c81e509c30e61cd7ead6e5") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 140ce11aac..5b65d2a372 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23895,3 +23895,34 @@ discovery of differentially expressed genes and markers.") estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.") (license license:gpl2+))) + +(define-public r-diversitree + (package + (name "r-diversitree") + (version "0.9-13") + (source + (origin + (method url-fetch) + (uri (cran-uri "diversitree" version)) + (sha256 + (base32 + "00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (inputs `(("fftw" ,fftw) ("gsl" ,gsl))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-desolve" ,r-desolve) + ("r-rcpp" ,r-rcpp) + ("r-subplex" ,r-subplex))) + (home-page "https://www.zoology.ubc.ca/prog/diversitree") + (synopsis "Comparative 'phylogenetic' analyses of diversification") + (description "This package contains a number of comparative \"phylogenetic\" +methods, mostly focusing on analysing diversification and character evolution. +Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction) +and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and +Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods +include Markov models of discrete and continuous trait evolution and constant +rate speciation and extinction.") + (license license:gpl2+))) -- 2.28.0