From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id AKrQJfj2U1+jcwAA0tVLHw (envelope-from ) for ; Sat, 05 Sep 2020 20:37:12 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id ReiuIfj2U1+FMgAAbx9fmQ (envelope-from ) for ; Sat, 05 Sep 2020 20:37:12 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id BEC6A9403D2 for ; Sat, 5 Sep 2020 20:37:11 +0000 (UTC) Received: from localhost ([::1]:53676 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kEevt-0001pl-7h for larch@yhetil.org; Sat, 05 Sep 2020 16:37:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:56626) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kEevm-0001pZ-5H for guix-patches@gnu.org; Sat, 05 Sep 2020 16:37:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:60871) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kEevl-0002yb-SK for guix-patches@gnu.org; Sat, 05 Sep 2020 16:37:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kEevl-0003SI-Pd for guix-patches@gnu.org; Sat, 05 Sep 2020 16:37:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#33032] Update References: <20181013034945.9545-1-brettg@posteo.net> In-Reply-To: <20181013034945.9545-1-brettg@posteo.net> Resent-From: Andreas Enge Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Sep 2020 20:37:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 33032 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch moreinfo To: 33032@debbugs.gnu.org Received: via spool by 33032-submit@debbugs.gnu.org id=B33032.159933821813272 (code B ref 33032); Sat, 05 Sep 2020 20:37:01 +0000 Received: (at 33032) by debbugs.gnu.org; 5 Sep 2020 20:36:58 +0000 Received: from localhost ([127.0.0.1]:44184 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kEevi-0003S0-42 for submit@debbugs.gnu.org; Sat, 05 Sep 2020 16:36:58 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:37606) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kEevf-0003Rr-QO for 33032@debbugs.gnu.org; Sat, 05 Sep 2020 16:36:56 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 3BEFBCE78; Sat, 5 Sep 2020 22:36:54 +0200 (CEST) X-Virus-Scanned: Debian amavisd-new at aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id lozbVHNa6SX3; Sat, 5 Sep 2020 22:36:53 +0200 (CEST) Received: from jurong (unknown [IPv6:2001:910:103f::610]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 47EF82356; Sat, 5 Sep 2020 22:36:53 +0200 (CEST) Date: Sat, 5 Sep 2020 22:36:39 +0200 From: Andreas Enge Message-ID: <20200905203639.GA24538@jurong> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spam-Score: 0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -0.3 (/) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: -0.51 X-TUID: BQMph2ORbiBJ Hello, I just updated seqmagick to 0.8.0. Then I tried to update python-biopython to the latest version, 1.78. With it, seqmagick fails to compile with the following message: mportError: cannot import name 'triefind' from 'Bio' (/gnu/store/9cr6885z39yb5x3pbanva5h9nacmlkvz-python-biopython-1.78/lib/python3.8/site-packages/Bio/__init__.py) ====================================================================== ERROR: Failure: ImportError (Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the ``molecule_type`` as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.) Andreas