From: Andreas Enge <andreas@enge.fr>
To: 33032@debbugs.gnu.org
Subject: [bug#33032] Update
Date: Sat, 5 Sep 2020 22:36:39 +0200 [thread overview]
Message-ID: <20200905203639.GA24538@jurong> (raw)
In-Reply-To: <20181013034945.9545-1-brettg@posteo.net>
Hello,
I just updated seqmagick to 0.8.0.
Then I tried to update python-biopython to the latest version, 1.78. With it,
seqmagick fails to compile with the following message:
mportError: cannot import name 'triefind' from 'Bio' (/gnu/store/9cr6885z39yb5x3pbanva5h9nacmlkvz-python-biopython-1.78/lib/python3.8/site-packages/Bio/__init__.py)
======================================================================
ERROR: Failure: ImportError (Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the ``molecule_type`` as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.)
Andreas
next prev parent reply other threads:[~2020-09-05 20:37 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-10-13 3:49 [bug#33032] [PATCH] gnu: update python-biopython to 1.72 Brett Gilio
2018-10-21 21:40 ` Ludovic Courtès
2020-09-05 20:36 ` Andreas Enge [this message]
2021-09-14 3:32 ` [bug#33032] Update Sarah Morgensen
2022-04-07 12:03 ` bug#33032: [PATCH] gnu: update python-biopython to 1.72 zimoun
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