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dkim=fail (rsa verify failed) header.d=posteo.net header.s=2017 header.b=PAR1ZOta; dmarc=fail reason="SPF not aligned (strict)" header.from=posteo.net (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 1.09 X-TUID: NHRTNe96d+Zs --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70af2d30f0..749eee7856 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21,6 +21,7 @@ ;;; Copyright © 2020 Danjela Lura ;;; Copyright © 2020 Naga Malleswari ;;; Copyright © 2020 Eric Brown +;;; Copyright © 2020 Antoine Côté ;;; ;;; This file is part of GNU Guix. ;;; @@ -22372,3 +22373,27 @@ using @dfn{SHAP} (Shapley additive explanation) visualization plots for and force plot. It relies on the @code{XGBoost} package to produce SHAP values.") (license license:expat))) + +(define-public r-transphylo + (package + (name "r-transphylo") + (version "1.4.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "TransPhylo" version)) + (sha256 + (base32 + "1506c97y8dnhd0c38rgvmg70q0l3xmmn07mjglhnw7hi5n5y9mv9")))) + (properties `((upstream-name . "TransPhylo"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) ("r-rcpp" ,r-rcpp))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://cran.r-project.org/web/packages/TransPhylo/") + (synopsis + "Inference of Transmission Tree from a Dated Phylogeny") + (description + "Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) , Didelot et al. (2017) .") + (license license:gpl2+))) -- 2.27.0