* [bug#42104] [PATCH] gnu: Add r-iml and dependency @ 2020-06-28 7:59 Lo Peter 2020-06-28 8:01 ` [bug#42104] [PATCH 1/2] gnu: Add r-metrics Peter Lo 2020-08-04 21:12 ` bug#42104: [PATCH] gnu: Add r-iml and dependency Ricardo Wurmus 0 siblings, 2 replies; 4+ messages in thread From: Lo Peter @ 2020-06-28 7:59 UTC (permalink / raw) To: 42104 Dear all, I am submitting a patch series of r-iml and its dependency. Regards, Peter ^ permalink raw reply [flat|nested] 4+ messages in thread
* [bug#42104] [PATCH 1/2] gnu: Add r-metrics. 2020-06-28 7:59 [bug#42104] [PATCH] gnu: Add r-iml and dependency Lo Peter @ 2020-06-28 8:01 ` Peter Lo 2020-06-28 8:01 ` [bug#42104] [PATCH 2/2] gnu: Add r-iml Peter Lo 2020-08-04 21:12 ` bug#42104: [PATCH] gnu: Add r-iml and dependency Ricardo Wurmus 1 sibling, 1 reply; 4+ messages in thread From: Peter Lo @ 2020-06-28 8:01 UTC (permalink / raw) To: 42104; +Cc: Peter Lo * gnu/packages/cran.scm (r-metrics): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..ec290d4b69 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,27 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-metrics + (package + (name "r-metrics") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "Metrics" version)) + (sha256 + (base32 + "0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk")))) + (properties `((upstream-name . "Metrics"))) + (build-system r-build-system) + (home-page "https://github.com/mfrasco/Metrics") + (synopsis + "Evaluation Metrics for Machine Learning") + (description + "An implementation of evaluation metrics in R that are commonly +used in supervised machine learning. It implements metrics for +regression, time series, binary classification, classification, and +information retrieval problems. It has zero dependencies and a +consistent, simple interface for all functions.") + (license license:bsd-3))) -- 2.17.1 ^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#42104] [PATCH 2/2] gnu: Add r-iml. 2020-06-28 8:01 ` [bug#42104] [PATCH 1/2] gnu: Add r-metrics Peter Lo @ 2020-06-28 8:01 ` Peter Lo 0 siblings, 0 replies; 4+ messages in thread From: Peter Lo @ 2020-06-28 8:01 UTC (permalink / raw) To: 42104; +Cc: Peter Lo * gnu/packages/cran.scm (r-iml): New variable. --- gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec290d4b69..12fc3fa011 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22349,3 +22349,45 @@ regression, time series, binary classification, classification, and information retrieval problems. It has zero dependencies and a consistent, simple interface for all functions.") (license license:bsd-3))) + +(define-public r-iml + (package + (name "r-iml") + (version "0.10.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "iml" version)) + (sha256 + (base32 + "0xm3q42qahq798ilgg050df0mahhbdfd3fx3i7cpx606h38si0x7")))) + (properties `((upstream-name . "iml"))) + (build-system r-build-system) + (propagated-inputs + `(("r-checkmate" ,r-checkmate) + ("r-data-table" ,r-data-table) + ("r-formula" ,r-formula) + ("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-metrics" ,r-metrics) + ("r-prediction" ,r-prediction) + ("r-r6" ,r-r6))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/christophM/iml") + (synopsis "Interpretable Machine Learning") + (description + "Interpretability methods to analyze the behavior and +predictions of any machine learning model. Implemented methods are: +Feature importance described by Fisher et al. (2018) +<arXiv:1801.01489>, accumulated local effects plots described by +Apley (2018) <arXiv:1612.08468>, partial dependence plots described by +Friedman (2001) <http://www.jstor.org/stable/2699986>, individual +conditional expectation ('ice') plots described by Goldstein et +al. (2013) <doi:10.1080/10618600.2014.907095>, local models (variant +of 'lime') described by Ribeiro et. al (2016) <arXiv:1602.04938>, the +Shapley Value described by Strumbelj et. al (2014) +<doi:10.1007/s10115-013-0679-x>, feature interactions described by +Friedman et. al <doi:10.1214/07-AOAS148> and tree surrogate models.") + (license license:expat))) -- 2.17.1 ^ permalink raw reply related [flat|nested] 4+ messages in thread
* bug#42104: [PATCH] gnu: Add r-iml and dependency 2020-06-28 7:59 [bug#42104] [PATCH] gnu: Add r-iml and dependency Lo Peter 2020-06-28 8:01 ` [bug#42104] [PATCH 1/2] gnu: Add r-metrics Peter Lo @ 2020-08-04 21:12 ` Ricardo Wurmus 1 sibling, 0 replies; 4+ messages in thread From: Ricardo Wurmus @ 2020-08-04 21:12 UTC (permalink / raw) To: 42104-done; +Cc: peterloleungyau Thank you for the patches! I’ve applied them with a few changes with commit 763453e18e. For future additions of R packages please pay attention to indentation (etc/indent-code.el does that for you) and to the description and synopsis. We often cannot use the texts that are provided on CRAN without modification. Thanks again! -- Ricardo PS: Your patches didn’t apply, and none of your other patches apply cleanly because they are all relative to the bottom of the file — which changes when I apply one of your patches. By adding packages in alphabetical order you can avoid these problems. ^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2020-08-04 21:15 UTC | newest] Thread overview: 4+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2020-06-28 7:59 [bug#42104] [PATCH] gnu: Add r-iml and dependency Lo Peter 2020-06-28 8:01 ` [bug#42104] [PATCH 1/2] gnu: Add r-metrics Peter Lo 2020-06-28 8:01 ` [bug#42104] [PATCH 2/2] gnu: Add r-iml Peter Lo 2020-08-04 21:12 ` bug#42104: [PATCH] gnu: Add r-iml and dependency Ricardo Wurmus
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