From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id TODXNflD+F7SHgAA0tVLHw (envelope-from ) for ; Sun, 28 Jun 2020 07:17:13 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id FSNpMflD+F46OwAAbx9fmQ (envelope-from ) for ; Sun, 28 Jun 2020 07:17:13 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id F1D019400BB for ; Sun, 28 Jun 2020 07:17:12 +0000 (UTC) Received: from localhost ([::1]:36568 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jpRYs-0003xT-An for larch@yhetil.org; Sun, 28 Jun 2020 03:17:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42760) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jpRYk-0003xA-6a for guix-patches@gnu.org; Sun, 28 Jun 2020 03:17:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:33517) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jpRYj-0004Mx-Td for guix-patches@gnu.org; Sun, 28 Jun 2020 03:17:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jpRYj-0006Df-OW for guix-patches@gnu.org; Sun, 28 Jun 2020 03:17:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#42102] [PATCH] gnu: Add r-fastshap. Resent-From: Peter Lo Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 28 Jun 2020 07:17:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 42102 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 42102@debbugs.gnu.org Cc: Peter Lo X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.159332859923871 (code B ref -1); Sun, 28 Jun 2020 07:17:01 +0000 Received: (at submit) by debbugs.gnu.org; 28 Jun 2020 07:16:39 +0000 Received: from localhost ([127.0.0.1]:45063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpRYM-0006Cx-QT for submit@debbugs.gnu.org; Sun, 28 Jun 2020 03:16:39 -0400 Received: from lists.gnu.org ([209.51.188.17]:35260) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpRYK-0006Co-8U for submit@debbugs.gnu.org; Sun, 28 Jun 2020 03:16:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42732) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jpRYJ-0003uj-Vm for guix-patches@gnu.org; Sun, 28 Jun 2020 03:16:36 -0400 Received: from mail-pl1-x62a.google.com ([2607:f8b0:4864:20::62a]:46899) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jpRYI-0004M5-6T for guix-patches@gnu.org; Sun, 28 Jun 2020 03:16:35 -0400 Received: by mail-pl1-x62a.google.com with SMTP id u9so2272008pls.13 for ; Sun, 28 Jun 2020 00:16:33 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id; bh=1hjNBFRy8Zuo+INvr4p13Pc6r0k4d6uxWyRPQMiyz/E=; b=lzrr2uKpLRpRmfwncbi3CF8j90UNMgft5nDnKQzZiDLU4N7qTZ9VF/9v++Vr8LyF1K dY5hc0/EbwGx2NEUqB35zkVGdK9E6s5WP16vr/ZvKFDeuT4G0fd/L50X6A7G9T2unrJI CRZQmlx3l+P5ozGecnoqHq8uRRAkuPXQHeUwHmc9PpVi/jjbGyIs2CjXXtCcQY4rG/Q4 r4mlH1nKcsBoWXkEiykDk/GsYtlLPEVvYUCcsHOvwr0GN+ixxfkgHcmyNufKJNFj1F4D BmqapUmoQqKJJTaItECL0Lori6OKl13S6kFNm64TOFtn4UAxYyrkvs3mU6R52kMTu+vK 0UkQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id; bh=1hjNBFRy8Zuo+INvr4p13Pc6r0k4d6uxWyRPQMiyz/E=; b=I0/QGi+W+bHk3CLQLesrds5G4jAGom1M7QEfXIzl8l9bm/auBhNRBNl7NwRBQ6nMnv Eq9aaq2hJ5vJ5c9sk96ES35rGy2pZUdV0f7LsUDiSJUtHv+oV5CjodABusamRtdFcqO3 a68onnsuFZP3fjcrSFKwuqazp57YQSC1S4yzrookpwoCCLyckop0XxT9O7xL8uUqktYX WdYf2JSMfe6oVA7oSbaDoJuMcBQwSK9rcY7piSm98KQHSC1+cRd7Zd4Jd5m/37BLNUoZ S/X+B+nzbTQ/zM+oZZnoUiv63eguz44iXdRnJlmtgEjW3ssUa8OMb6YSqhkyLROOvMpw lBfQ== X-Gm-Message-State: AOAM532eEPQOEUywiEPuJE1c2hhQJHZigDgco/6PWr2A5zBUiaD8ogWn BZDltUp+aw8K7eCSqp97VRISPV3vvHw= X-Google-Smtp-Source: ABdhPJzWycOZjSE2/3AciKWr6NZDeEMGq/8TbTVm2Ej79baniGctWdsQPsemZqV38Gh+PMNhXB6hJA== X-Received: by 2002:a17:90a:7409:: with SMTP id a9mr11761114pjg.107.1593328592212; Sun, 28 Jun 2020 00:16:32 -0700 (PDT) Received: from localhost.localdomain (059149170072.ctinets.com. [59.149.170.72]) by smtp.gmail.com with ESMTPSA id h3sm6857663pjz.23.2020.06.28.00.16.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 28 Jun 2020 00:16:31 -0700 (PDT) From: Peter Lo Date: Sun, 28 Jun 2020 15:16:19 +0800 Message-Id: <20200628071619.4030-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::62a; envelope-from=peterloleungyau@gmail.com; helo=mail-pl1-x62a.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: 0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -2.3 (--) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=lzrr2uKp; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 1.09 X-TUID: DpVr2CgHkwxZ * gnu/packages/cran.scm (r-fastshap): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..03e6bf6189 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,36 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-fastshap + (package + (name "r-fastshap") + (version "0.0.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "fastshap" version)) + (sha256 + (base32 + "08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg")))) + (properties `((upstream-name . "fastshap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-matrixstats" ,r-matrixstats) + ("r-plyr" ,r-plyr) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-tibble" ,r-tibble))) + (home-page + "https://github.com/bgreenwell/fastshap") + (synopsis "Fast Approximate Shapley Values") + (description + "Computes fast (relative to other implementations) approximate +Shapley values for any supervised learning model. Shapley values help +to explain the predictions from any black box model using ideas from +game theory; see Strumbel and Kononenko (2014) + for details.") + (license license:gpl2+))) -- 2.17.1