From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 6CPcEtYo915wSQAA0tVLHw (envelope-from ) for ; Sat, 27 Jun 2020 11:09:10 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id aHXcDtYo916THgAAB5/wlQ (envelope-from ) for ; Sat, 27 Jun 2020 11:09:10 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id D24E6940214 for ; Sat, 27 Jun 2020 11:09:09 +0000 (UTC) Received: from localhost ([::1]:41994 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jp8ho-0001fA-DY for larch@yhetil.org; Sat, 27 Jun 2020 07:09:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:57062) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jp8hi-0001f0-Fg for guix-patches@gnu.org; Sat, 27 Jun 2020 07:09:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:60228) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jp8hi-0004Fe-6f for guix-patches@gnu.org; Sat, 27 Jun 2020 07:09:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jp8hi-0005Gg-0G for guix-patches@gnu.org; Sat, 27 Jun 2020 07:09:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#42079] [PATCH] gnu: Add r-rismed. Resent-From: Peter Lo Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 27 Jun 2020 11:09:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 42079 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 42079@debbugs.gnu.org Cc: Peter Lo X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.159325608820176 (code B ref -1); Sat, 27 Jun 2020 11:09:01 +0000 Received: (at submit) by debbugs.gnu.org; 27 Jun 2020 11:08:08 +0000 Received: from localhost ([127.0.0.1]:43541 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jp8gp-0005FM-R7 for submit@debbugs.gnu.org; Sat, 27 Jun 2020 07:08:08 -0400 Received: from lists.gnu.org ([209.51.188.17]:40206) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jp8gn-0005FE-CH for submit@debbugs.gnu.org; Sat, 27 Jun 2020 07:08:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:56762) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jp8gn-0001Py-7T for guix-patches@gnu.org; Sat, 27 Jun 2020 07:08:05 -0400 Received: from mail-pf1-x432.google.com ([2607:f8b0:4864:20::432]:36816) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jp8gk-0003ty-5W for guix-patches@gnu.org; Sat, 27 Jun 2020 07:08:04 -0400 Received: by mail-pf1-x432.google.com with SMTP id 207so5609791pfu.3 for ; Sat, 27 Jun 2020 04:08:01 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id; bh=tWzmiEI+vK4Nwbbyr+LaTgXqBgx6ahnzRj5JgDam1s0=; b=s0imnYsjcslbDKlWUrsyvJ2MmTf5YqMo2l5TxiFbNfD+cKwSWoAGV0OafBUqgp3lHZ zqrpdL1nJFpgF/e/eQ70b4NIeziUf6ghSDNGG5UFv5D618z11rnL9A5byeiIEzm0nNyi hKNMNlMPUbHhtajQb0NiGirUcr4W8DMqhcERiP38C6MjaakpetXoE0EN7B4KJR2XsJuV 4FoUs6/c5LQQvgJC2lrjaAvKoEjAWE0IoLbgmRXzlIU9aeYfVmZ5IBSy3coFyEBNz78w L1cZ5QkPh4oJkNaV2jgYD/tRCCvhLA16P05yvInbLPGTUzd+HkVT/fsfK8TmhSWjeoFs u5lg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id; bh=tWzmiEI+vK4Nwbbyr+LaTgXqBgx6ahnzRj5JgDam1s0=; b=hkMAYVf8aduL0QEXOofaal7R9HhK4ABmofl5yOkfrEsuXxGtVwTCiJPCkzPOmhy2Jl b4pimuY1a081qGdRNqKn89tH1s+A7bdKd+AdtQCQ1p+Q+raV7hPXwO9WM0NZP6Wp1uOm 5mxP3BP8bO95CURTSDg8U7UodIzVvYZ23VJ9vZB/aLQuREsyJ+xZhGvTs8ySCdAXE/F4 EAdX401Xeg3H3gB0m1dLAgNJheWeKJqsJwcuMDH3bmr9Fqk9bdWa5qwNd56wPqaQFGx/ IVsn4Kc4op7IOSnrFiKrUHLisjaJ6JOfvpO/pLIgEK7ldgVI/x/+P7das+6qEgHJCk6G YL5Q== X-Gm-Message-State: AOAM533hTkSV3Jorj/1Q9gONgFoSt2k6G9E0V7VdY7YBlVBphbHLzB55 v/MhigxIq7QGn1WT22LXnevOoVKf5ww= X-Google-Smtp-Source: ABdhPJwzCeE7Gaizq1jdW8pPVZKoapPxUa5A7ipEpLmrPidvJodqxXvC3lKQh4WG/oyCWkegZns3QQ== X-Received: by 2002:a63:531e:: with SMTP id h30mr2744243pgb.165.1593256079992; Sat, 27 Jun 2020 04:07:59 -0700 (PDT) Received: from localhost.localdomain (059149170072.ctinets.com. [59.149.170.72]) by smtp.gmail.com with ESMTPSA id d5sm13579670pjo.20.2020.06.27.04.07.58 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 27 Jun 2020 04:07:58 -0700 (PDT) From: Peter Lo Date: Sat, 27 Jun 2020 19:07:43 +0800 Message-Id: <20200627110743.6814-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::432; envelope-from=peterloleungyau@gmail.com; helo=mail-pf1-x432.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, URIBL_BLOCKED=0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: 0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -2.3 (--) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=s0imnYsj; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 2.59 X-TUID: +LwadnPqyvwI * gnu/packages/cran.scm (r-rismed): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..afd5c0e1e3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,27 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-rismed + (package + (name "r-rismed") + (version "2.1.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "RISmed" version)) + (sha256 + (base32 + "08dmkkxsmwp9b4h2g1bbx03cijn793fsnzkmbima8x9d42vxnm1l")))) + (properties `((upstream-name . "RISmed"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/RISmed") + (synopsis "Download Content from NCBI Databases") + (description + "This package provides a set of tools to extract bibliographic +content from the National Center for Biotechnology Information (NCBI) +databases, including PubMed. The name RISmed is a portmanteau of +RIS (for Research Information Systems, a common tag format for +bibliographic data) and PubMed.") + (license license:gpl2+))) -- 2.17.1