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[82.242.148.1]) by smtp.gmail.com with ESMTPSA id y70sm4574993wmc.36.2020.05.02.06.48.26 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 02 May 2020 06:48:27 -0700 (PDT) From: Vincent Legoll Date: Sat, 2 May 2020 15:48:14 +0200 Message-Id: <20200502134815.13390-2-vincent.legoll@gmail.com> X-Mailer: git-send-email 2.26.1 In-Reply-To: <20200502134815.13390-1-vincent.legoll@gmail.com> References: <20200502134815.13390-1-vincent.legoll@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 X-Spam-Score: 4.09 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=S2oZJ7xd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 2001:470:142::17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Scan-Result: default: False [4.09 / 13.00]; RCVD_VIA_SMTP_AUTH(0.00)[]; GENERIC_REPUTATION(0.00)[-0.49501607043949]; TO_DN_SOME(0.00)[]; R_SPF_ALLOW(-0.20)[+ip6:2001:470:142::/48:c]; R_DKIM_REJECT(1.00)[gmail.com:s=20161025]; DWL_DNSWL_FAIL(0.00)[2001:470:142::17:server fail]; FREEMAIL_FROM(0.00)[gmail.com]; BROKEN_CONTENT_TYPE(1.50)[]; R_MISSING_CHARSET(2.50)[]; IP_REPUTATION_HAM(0.00)[asn: 22989(0.15), country: US(-0.00), ip: 2001:470:142::17(-0.50)]; DKIM_TRACE(0.00)[gmail.com:-]; RCPT_COUNT_TWO(0.00)[2]; MX_GOOD(-0.50)[cached: eggs.gnu.org]; MAILLIST(-0.20)[mailman]; FORGED_RECIPIENTS_MAILLIST(0.00)[]; RCVD_IN_DNSWL_FAIL(0.00)[2001:470:142::17:server fail]; MIME_TRACE(0.00)[0:+]; RCVD_TLS_LAST(0.00)[]; ASN(0.00)[asn:22989, ipnet:2001:470:142::/48, country:US]; TAGGED_FROM(0.00)[larch=yhetil.org]; ARC_NA(0.00)[]; FROM_NEQ_ENVFROM(0.00)[vincentlegoll@gmail.com,guix-patches-bounces@gnu.org]; FROM_HAS_DN(0.00)[]; URIBL_BLOCKED(0.00)[fz-juelich.de:url]; MID_RHS_MATCH_FROM(0.00)[]; TAGGED_RCPT(0.00)[]; PREVIOUSLY_DELIVERED(0.00)[40691@debbugs.gnu.org]; MIME_GOOD(-0.10)[text/plain]; HAS_LIST_UNSUB(-0.01)[]; FREEMAIL_CC(0.00)[gmail.com]; RCVD_COUNT_SEVEN(0.00)[10]; FORGED_SENDER_MAILLIST(0.00)[]; DMARC_POLICY_SOFTFAIL(0.10)[gmail.com : SPF not aligned (relaxed),none] X-TUID: L1gV+vY4qfcF * gnu/packages/bioinformatics.scm (lmfit): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f90401a560..02eae3b589 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -821,6 +821,30 @@ optionally velocities and the H-matrix. Coordinates and velocities are stored with user-specified precision.") (license license:bsd-3))) +(define-public lmfit + (package + (name "lmfit") + (version "8.2.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://jugit.fz-juelich.de/mlz/lmfit.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "00bch77a6qgnw6vzsjn2a42n8n683ih3xm0wpr454jxa15hw78vf")))) + (build-system cmake-build-system) + (native-inputs + `(("perl" ,perl))) ; for pod2man + (home-page "https://jugit.fz-juelich.de/mlz/lmfit") + (synopsis "C library for Levenberg-Marquardt minimization and least-squares +fitting.") + (description "lmfit is a C library for Levenberg-Marquardt least-squares +minimization and curve fitting. It is mature code, based on decades-old +algorithms from the FORTRAN library MINPACK.") + (license license:bsd-2))) + (define-public python-pybedtools (package (name "python-pybedtools") -- 2.26.0