From: zimoun <zimon.toutoune@gmail.com>
To: 37988@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#37988] [PATCH 6/6] gnu: Add r-flowworkspace.
Date: Wed, 30 Oct 2019 11:25:31 +0100 [thread overview]
Message-ID: <20191030102531.12495-6-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20191030102531.12495-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
---
gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2636095e0f..dabfcb2cb3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6260,3 +6260,53 @@ represent and interact with the gated cytometry data.")
"This package provides HDF5 storage based methods and functions for
manipulation of flow cytometry data.")
(license license:artistic2.0)))
+
+(define-public r-flowworkspace
+ (package
+ (name "r-flowworkspace")
+ (version "3.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "flowWorkspace" version))
+ (sha256
+ (base32
+ "1r1xxqzlp2x2gf79f37ckninnyjkxcb7xz7rffg2nadmapl5shvw"))))
+ (properties
+ `((upstream-name . "flowWorkspace")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-cytolib" ,r-cytolib)
+ ("r-data-table" ,r-data-table)
+ ("r-digest" ,r-digest)
+ ("r-dplyr" ,r-dplyr)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowviz" ,r-flowviz)
+ ("r-graph" ,r-graph)
+ ("r-gridextra" ,r-gridextra)
+ ("r-lattice" ,r-lattice)
+ ("r-latticeextra" ,r-latticeextra)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-ncdfflow" ,r-ncdfflow)
+ ("r-rbgl" ,r-rbgl)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppparallel" ,r-rcppparallel)
+ ("r-rgraphviz" ,r-rgraphviz)
+ ("r-rprotobuflib" ,r-rprotobuflib)
+ ("r-scales" ,r-scales)
+ ("r-stringr" ,r-stringr)))
+ (home-page
+ "https://bioconductor.org/packages/flowWorkspace")
+ (synopsis "Infrastructure for representing and interacting with cytometry data sets")
+ (description
+ "This package provides importer for basic workspaces from the proprietary
+software FlowJo into the BioConductor package flowCore. It is designed to
+facilitate comparison of automated gating methods against manual gating.
+Gating hierarchies, groups of samples, compensation, and transformation are
+performed so that the output matches the analysis from the proprietary
+software FlowJo.")
+ (license license:artistic2.0)))
--
2.23.0
next prev parent reply other threads:[~2019-10-30 10:26 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-10-30 10:23 [bug#37988] [PATCH 0/6] Add flowWorkspace from BioConductor zimoun
2019-10-30 10:25 ` [bug#37988] [PATCH 1/6] gnu: Add r-idpmisc zimoun
2019-10-30 10:25 ` [bug#37988] [PATCH 2/6] gnu: Add r-flowviz zimoun
2019-10-30 10:25 ` [bug#37988] [PATCH 3/6] gnu: Add r-rprotobuflib zimoun
2019-10-30 11:39 ` Ricardo Wurmus
2019-10-30 13:29 ` zimoun
2019-11-05 17:49 ` [bug#37988] [PATCH v2 " zimoun
2019-11-05 18:19 ` [bug#37988] [PATCH v3 " zimoun
2019-11-05 18:29 ` [bug#37988] [PATCH v4 " zimoun
2019-10-30 10:25 ` [bug#37988] [PATCH 4/6] gnu: Add r-cytolib zimoun
2019-10-30 11:41 ` Ricardo Wurmus
2019-10-30 12:42 ` [bug#37988] [PATCH v2 " zimoun
2019-10-30 10:25 ` [bug#37988] [PATCH 5/6] gnu: Add r-ncdfflow zimoun
2019-10-30 11:42 ` Ricardo Wurmus
2019-10-30 10:25 ` zimoun [this message]
2020-02-21 16:39 ` [bug#37988] why? zimoun
2020-02-21 18:38 ` Ricardo Wurmus
2020-02-21 19:12 ` zimoun
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