From: zimoun <zimon.toutoune@gmail.com>
To: 36800@debbugs.gnu.org
Subject: [bug#36800] [PATCH 11/11] gnu: Add r-depecher.
Date: Wed, 24 Jul 2019 20:22:04 +0200 [thread overview]
Message-ID: <20190724182204.6818-12-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-depecher): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 64625aedd4..7c9a3b7417 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5013,3 +5013,47 @@ data sets: N-integration with variants of Generalised Canonical Correlation
Analysis and P-integration with variants of multi-group Partial Least
Squares.")
(license license:gpl2+)))
+
+(define-public r-depecher
+ (package
+ (name "r-depecher")
+ (version "1.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DepecheR" version))
+ (sha256
+ (base32
+ "0qj2h2a50fncppvi2phh0mbivxkn1mv702mqpi9mvvkf3bzq8m0h"))))
+ (properties `((upstream-name . "DepecheR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beanplot" ,r-beanplot)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-dosnow" ,r-dosnow)
+ ("r-dplyr" ,r-dplyr)
+ ("r-foreach" ,r-foreach)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gplots" ,r-gplots)
+ ("r-mass" ,r-mass)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-mixomics" ,r-mixomics)
+ ("r-moments" ,r-moments)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-reshape2" ,r-reshape2)
+ ("r-viridis" ,r-viridis)))
+ (home-page
+ "https://bioconductor.org/packages/DepecheR")
+ (synopsis
+ "Determination of essential phenotypic elements of clusters in high-dimensional entities")
+ (description
+ "The purpose of this package is to identify traits in a dataset that can
+separate groups. This is done on two levels. First, clustering is performed,
+using an implementation of sparse K-means. Secondly, the generated clusters
+are used to predict outcomes of groups of individuals based on their
+distribution of observations in the different clusters. As certain clusters
+with separating information will be identified, and these clusters are defined
+by a sparse number of variables, this method can reduce the complexity of
+data, to only emphasize the data that actually matters.")
+ (license license:expat)))
--
2.21.0
next prev parent reply other threads:[~2019-07-24 18:23 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-07-24 18:21 [bug#36789] [PATCH 00/11] Add r packages to process flow cytometry data zimoun
2019-07-24 18:21 ` [bug#36790] [PATCH 01/11] gnu: Add r-umap zimoun
2019-07-24 19:17 ` [bug#36790] Merge 36789 36790 zimoun
2019-07-24 18:21 ` [bug#36791] [PATCH 02/11] gnu: Add r-kableextra zimoun
2019-07-24 18:21 ` [bug#36792] [PATCH 03/11] gnu: Add r-all zimoun
2019-07-24 18:21 ` [bug#36793] [PATCH 04/11] gnu: Add r-flowcore zimoun
2019-07-24 18:21 ` [bug#36794] [PATCH 05/11] gnu: Add r-flowutils zimoun
2019-07-24 18:21 ` [bug#36795] [PATCH 06/11] gnu: Add r-consensusclusterplus zimoun
2019-07-24 18:22 ` [bug#36796] [PATCH 07/11] gnu: Add r-flowmeans zimoun
2019-07-24 18:22 ` [bug#36797] [PATCH 08/11] gnu: Add r-flowpeaks zimoun
2019-07-24 20:51 ` Ricardo Wurmus
2020-02-21 17:07 ` bug#36797: patches merged zimoun
2019-07-24 18:22 ` [bug#36798] [PATCH 09/11] gnu: Add r-flowsom zimoun
2019-07-24 18:22 ` [bug#36799] [PATCH 10/11] gnu: Add r-mixomics zimoun
2019-07-24 18:22 ` zimoun [this message]
2019-07-24 20:49 ` [bug#36800] [PATCH 11/11] gnu: Add r-depecher Ricardo Wurmus
2019-07-25 9:54 ` zimoun
2019-07-25 12:45 ` Ricardo Wurmus
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