From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:41486) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuw-0003fJ-De for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:11 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuv-00005O-9g for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:10 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57431) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuv-000055-4o for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:09 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1hqLuv-0005Q8-07 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:09 -0400 Subject: [bug#36798] [PATCH 09/11] gnu: Add r-flowsom. Resent-Message-ID: Received: from eggs.gnu.org ([2001:470:142:3::10]:41139) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuG-0003JC-Sm for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:29 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuF-0007Jz-H0 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:28 -0400 Received: from mail-wm1-x336.google.com ([2a00:1450:4864:20::336]:37215) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuF-0007If-Af for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: by mail-wm1-x336.google.com with SMTP id f17so42458535wme.2 for ; Wed, 24 Jul 2019 11:22:27 -0700 (PDT) From: zimoun Date: Wed, 24 Jul 2019 20:22:02 +0200 Message-Id: <20190724182204.6818-10-zimon.toutoune@gmail.com> In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 36798@debbugs.gnu.org * gnu/packages/bioconductor.scm (r-flowsom): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ab4d9f4075..dd6570ed17 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4930,3 +4930,32 @@ and to both short and long sequence reads.") "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.") (license license:artistic2.0))) ;TODO: artistic1.0 does not exist +(define-public r-flowsom + (package + (name "r-flowsom") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "FlowSOM" version)) + (sha256 + (base32 + "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l")))) + (properties `((upstream-name . "FlowSOM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-consensusclusterplus" + ,r-consensusclusterplus) + ("r-flowcore" ,r-flowcore) + ("r-flowutils" ,r-flowutils) + ("r-igraph" ,r-igraph) + ("r-tsne" ,r-tsne) + ("r-xml" ,r-xml))) + (home-page "http://www.r-project.org") + (synopsis + "Using self-organizing maps for visualization and interpretation of cytometry data") + (description + "FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.") + (license license:gpl2+))) + -- 2.21.0