From: Pierre Neidhardt <mail@ambrevar.xyz>
To: 35792@debbugs.gnu.org
Subject: [bug#35792] [PATCH 3/7] gnu: Add multichoose.
Date: Sat, 18 May 2019 19:26:36 +0200 [thread overview]
Message-ID: <20190518172640.7165-3-mail@ambrevar.xyz> (raw)
In-Reply-To: <20190518172640.7165-1-mail@ambrevar.xyz>
* gnu/packages/bioinformatics.scm (multichoose): New variable.
---
gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1bf33853b0..3ff0f69f5e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14899,3 +14899,39 @@ some of the details of opening and jumping in tabix-indexed files.")
(description "Implementation of the Smith-Waterman algorithm.")
;; The licensing terms are unclear: https://github.com/ekg/smithwaterman/issues/9.
(license (list license:gpl2 license:expat)))))
+
+(define-public multichoose
+ (package
+ (name "multichoose")
+ (version "1.0.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ekg/multichoose/")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0ci5fqvmpamwgxvmyd79ygj6n3bnbl3vc7b6h1sxz58186sm3pfs"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("python" ,python-2)
+ ("node" ,node)))
+ (arguments
+ `(#:tests? #f ; There are no tests to run.
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure) ; There is no configure phase.
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ ;; TODO: There are Python modules for these programs too.
+ (install-file "multichoose" bin)
+ (install-file "multipermute" bin)))))))
+ (home-page "https://github.com/ekg/multichoose")
+ (synopsis "Efficient loopless multiset combination generation algorithm")
+ (description "This library implements an efficient loopless multiset
+combination generation algorithm which is (approximately) described in
+\"Loopless algorithms for generating permutations, combinations, and other
+combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
+1973. (Algorithm 7.)")
+ (license license:expat)))
--
2.21.0
next prev parent reply other threads:[~2019-05-18 17:27 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-05-18 17:25 [bug#35792] [PATCH 0/7] Package freebayes Pierre Neidhardt
2019-05-18 17:26 ` [bug#35792] [PATCH 1/7] gnu: Add tabixpp Pierre Neidhardt
2019-05-18 17:26 ` [bug#35792] [PATCH 2/7] gnu: Add smithwaterman Pierre Neidhardt
2019-08-08 14:30 ` Ricardo Wurmus
2019-08-08 16:29 ` Efraim Flashner
2019-08-08 16:31 ` Ricardo Wurmus
2019-05-18 17:26 ` Pierre Neidhardt [this message]
2019-05-18 17:26 ` [bug#35792] [PATCH 4/7] gnu: Add fsom Pierre Neidhardt
2019-05-18 17:26 ` [bug#35792] [PATCH 5/7] gnu: Add fastahack Pierre Neidhardt
2019-05-18 17:26 ` [bug#35792] [PATCH 6/7] gnu: Add vcflib Pierre Neidhardt
2019-05-18 17:26 ` [bug#35792] [PATCH 7/7] gnu: Add freebayes Pierre Neidhardt
2019-08-01 14:38 ` Pjotr Prins
2019-08-08 12:20 ` bug#35792: " Efraim Flashner
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