From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:42033) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzk5I-000317-4u for guix-patches@gnu.org; Tue, 11 Sep 2018 10:56:12 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzk5D-0002Z2-5D for guix-patches@gnu.org; Tue, 11 Sep 2018 10:56:08 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:32926) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fzk5C-0002Yf-Ov for guix-patches@gnu.org; Tue, 11 Sep 2018 10:56:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fzk5B-0003u6-TL for guix-patches@gnu.org; Tue, 11 Sep 2018 10:56:02 -0400 Subject: [bug#32587] [PATCH] gnu: Add r-pore. References: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de> In-Reply-To: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de> Resent-Message-ID: From: pimi Date: Tue, 11 Sep 2018 16:54:32 +0200 Message-ID: <20180911145432.3477-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32587@debbugs.gnu.org Cc: pimi gnu/packages/bioinformatics.scm (r-pore): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f6410c3ca..49ed19535 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13699,3 +13699,31 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many options), bedgraph, links (represented as arcs), and Hi-C matrices. pyGenomeTracks can make plots with or without Hi-C data.") (license license:gpl3+))) + +(define-public r-pore + (package + (name "r-pore") + (version "0.24") + (source + (origin + (method url-fetch) + (uri + (string-append + "mirror://sourceforge/projects/rpore/files/"version"/poRe_"version".tar.gz")) + (sha256 + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv")))) + (properties `((upstream-name . "poRe"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bit64" ,r-bit64) + ("r-data-table" ,r-data-table) + ("r-rhdf5" ,r-rhdf5) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs))) + (home-page "https://sourceforge.net/projects/rpore") + (synopsis "Visualize Nanopore sequencing data") + (description + "This package provides graphical user interfaces to organize and visualize Nanopore +sequencing data.") + ;;license unclear https://github.com/mw55309/poRe_docs/issues/10 + (license license:bsd-3))) -- 2.17.1