From: pimi <madalinionel.patrascu@mdc-berlin.de>
To: 32587@debbugs.gnu.org
Cc: pimi <madalinionel.patrascu@mdc-berlin.de>
Subject: [bug#32587] [PATCH] gnu: Add r-pore.
Date: Tue, 11 Sep 2018 16:54:32 +0200 [thread overview]
Message-ID: <20180911145432.3477-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de>
gnu/packages/bioinformatics.scm (r-pore): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f6410c3ca..49ed19535 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13699,3 +13699,31 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many
options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))
+
+(define-public r-pore
+ (package
+ (name "r-pore")
+ (version "0.24")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append
+ "mirror://sourceforge/projects/rpore/files/"version"/poRe_"version".tar.gz"))
+ (sha256
+ (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv"))))
+ (properties `((upstream-name . "poRe")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bit64" ,r-bit64)
+ ("r-data-table" ,r-data-table)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-shiny" ,r-shiny)
+ ("r-svdialogs" ,r-svdialogs)))
+ (home-page "https://sourceforge.net/projects/rpore")
+ (synopsis "Visualize Nanopore sequencing data")
+ (description
+ "This package provides graphical user interfaces to organize and visualize Nanopore
+sequencing data.")
+ ;;license unclear https://github.com/mw55309/poRe_docs/issues/10
+ (license license:bsd-3)))
--
2.17.1
next prev parent reply other threads:[~2018-09-11 14:56 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-08-30 10:37 [bug#32587] [PATCH] gnu: Add r-pore pimi
2018-09-03 15:22 ` Ricardo Wurmus
2018-09-11 14:54 ` pimi [this message]
2018-09-21 12:29 ` bug#32587: " Ludovic Courtès
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