From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:45600) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzREQ-0006wD-JA for guix-patches@gnu.org; Mon, 10 Sep 2018 14:48:21 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzREJ-0004CT-JL for guix-patches@gnu.org; Mon, 10 Sep 2018 14:48:16 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:59733) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fzREB-00049N-AW for guix-patches@gnu.org; Mon, 10 Sep 2018 14:48:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fzREB-0005fL-7w for guix-patches@gnu.org; Mon, 10 Sep 2018 14:48:03 -0400 Subject: [bug#32688] [PATCH] gnu: Add r-absim. Resent-Message-ID: Received: from eggs.gnu.org ([2001:4830:134:3::10]:45128) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzRDb-0006O4-7U for guix-patches@gnu.org; Mon, 10 Sep 2018 14:47:32 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzQyD-0001iX-Bp for guix-patches@gnu.org; Mon, 10 Sep 2018 14:31:36 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:55998) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzQyC-0001gV-TE for guix-patches@gnu.org; Mon, 10 Sep 2018 14:31:33 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 4CECEAB36F3 for ; Mon, 10 Sep 2018 20:31:30 +0200 (CEST) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id FcdQt7AtJkBx for ; Mon, 10 Sep 2018 20:31:23 +0200 (CEST) Received: from SW-IT-P-CAS2.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Mon, 10 Sep 2018 20:31:23 +0200 (CEST) From: pimi Date: Mon, 10 Sep 2018 20:30:57 +0200 Message-ID: <20180910183057.7292-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32688@debbugs.gnu.org Cc: pimi gnu/packages/cran.scm (r-absim): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 814439172..fd4929c0f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5564,3 +5564,31 @@ gf_density(), and so on, bring the formula interface to ggplot(). This captures and extends the excellent simplicity of the lattice-graphics formula interface, while providing the intuitive capabilities of @code{r-ggplot2}.") (license license:expat))) + +(define-public r-absim + (package + (name "r-absim") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbSim" version)) + (sha256 + (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m")))) + (properties `((upstream-name . "AbSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-powerlaw" ,r-powerlaw))) + (home-page "https://cran.r-project.org/web/packages/AbSim/") + (synopsis "Time resolved simulations of antibody repertoires") + (description + "This package provides simulation methods for the evolution of antibody repertoires. + The heavy and light chain variable region of both human and C57BL/6 mice can +be simulated in a time-dependent fashion. Both single lineages using one set of +V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins +with an initial V-D-J recombination event, starting the first phylogenetic tree. + Upon completion, the main loop of the algorithm begins, with each iteration +representing one simulated time step. Various mutation events are possible at +each time step, contributing to a diverse final repertoire.") + (license license:gpl2))) -- 2.17.1